Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fulmarus_20glacialis_20[refseq_20GCF_5F000690835.1_202014-05-13] 57,389 sequences; 1,141,395,646 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq40792 96.9 2e-14 seq33965 87.8 1e-11 seq33557 86.0 4e-11 >seq40792 Length=30162 Score = 96.9 bits (106), Expect = 2e-14 Identities = 98/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 476090 GGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCA 476149 |||||||| |||||||||||||| || ||||| |||||||| || |||||||||||||| Sbjct 3053 GGTATTCCCCCTGCTCCCAGAGGTGTACCTCAGATTGAAGTAACCTTTGATATTGATGCC 3112 Query 476150 AATGGTATTCTTAATGTTACTGCTTGTGATAAATCTAGTAACAAGAGTAAAAATATAACT 476209 ||||| || | ||||| ||||| ||||| || | |||| || || || || Sbjct 3113 AATGGCATCTTGAATGTGTCTGCTGTGGATAAGAGTACTGGCAAGGAGAACAAGATCACG 3172 Query 476210 ATTACAAA 476217 || ||||| Sbjct 3173 ATAACAAA 3180 Score = 91.5 bits (100), Expect = 1e-12 Identities = 220/328 (67%), Gaps = 4/328 (1%) Strand=Plus/Plus Query 475496 ACTGCTTGTGAACGTGCTAAGCGAGCTCTTTCTTCTGCTACTCAAACTACTGTTGAAGTT 475555 ||||| || || ||||| ||||| |||| || || || || | | | ||||| || Sbjct 1803 ACTGCATGCGAGCGTGCAAAGCGTACTCTGTCGTCAAGCACGCAGGCCAGTATTGAAATT 1862 Query 475556 GATTCTCTTTTTGAAGGAATTGATTATAATACTCTTATTACAAGGGCTAAATTTGAAGAT 475615 |||||||| | ||| || ||||| | | || ||||| || ||| |||||||| Sbjct 1863 GATTCTCTCTATGAGGGTATTGACTTCTACACGTCCATTACCAGAGCTCGCTTTGAAGAG 1922 Query 475616 ATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCCGTTGAACAAGTTCTCAGAGATTCT 475675 | |||| || || | || | || || || ||| | | || | ||| | Sbjct 1923 CTGAACGCTGACCTGTTCCGTGGCACCCTCGATCCTGTGGAAAAGGCCCTGCGGGATGCC 1982 Query 475676 AAACTTGACAAATCACAAGTCCATGAAATTGTTCTTGTAGGAGGTTCAACAAGAATTCCA 475735 ||||| |||||||| || ||||||| || || || || || || || || | || ||| Sbjct 1983 AAACTCGACAAATCGCAGATCCATGACATCGTGCTGGTTGGTGGGTCTACTCGTATCCCA 2042 Query 475736 AAAATAAGAGAAA-TGCTTTCATCATATTTT-AATGGTAAAAAGTTAAATGAAAGTGTAA 475793 || || ||||| |||| || || | || ||||| ||| || | || | || | | Sbjct 2043 AAGATTC-AGAAACTGCTG-CAGGATTTCTTCAATGGCAAAGAGCTGAACAAGAGCATCA 2100 Query 475794 ATCCTGATGAAGCTGTTGCATATGGAGC 475821 |||||||||||||||| || ||||| || Sbjct 2101 ATCCTGATGAAGCTGTGGCTTATGGTGC 2128 >seq33965 Length=3108 Score = 87.8 bits (96), Expect = 1e-11 Identities = 111/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676 |||||| |||||||| |||||||| || || | || ||||| || ||||| |||||||| Sbjct 826 ATCTTCCAGTTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTT 767 Query 480677 GTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAAT 480736 ||| || ||||| ||||| ||||| || ||| || | | || ||||| || Sbjct 766 GTCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCACTGGGCTCAACCTCCAGGGTGAT 707 Query 480737 AGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || || || || ||||| ||||| || || Sbjct 706 GGTCTTGCCTGTCAGGGTCTTCACGAAGATCTG 674 Score = 86.0 bits (94), Expect = 4e-11 Identities = 113/154 (73%), Gaps = 2/154 (1%) Strand=Plus/Minus Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676 |||||| |||||||| |||||||| || || | || ||||| || ||||| |||||||| Sbjct 370 ATCTTCCAGTTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTT 311 Query 480677 GTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTG-TGAAGTTTCAAGGGTAA 480735 ||| || ||||| || ||| |||||| || ||| || | | || | ||| ||| | Sbjct 310 GTCCTGGATCTTGGCCTTAACATTTTCAATGGTGTCACTGGGCTCAACCTCCAA-GGTGA 252 Query 480736 TAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | || || || || || ||||| || || || || Sbjct 251 TGGTCTTGCCTGTCAGGGTCTTCACAAAGATCTG 218 >seq33557 Length=26293 Score = 86.0 bits (94), Expect = 4e-11 Identities = 96/125 (77%), Gaps = 5/125 (4%) Strand=Plus/Plus Query 474778 TCAAGCAACTAAAGATGC-GGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATG 474836 ||| || || |||||||| ||| ||| |||| || | |||||||| | | ||||||| Sbjct 5100 TCAGGCTACAAAAGATGCTGGGCAGA-TTGCTGGCTTGAATGTTTTGAGGGTGATTAATG 5158 Query 474837 AACCAACAGCAGCCGCACTTGCTTATGGTCTTGATAAGAATTCTGACAAAG---AAGTAA 474893 ||||||||||||| |||||||| |||||||| || ||| | ||||||| ||||| Sbjct 5159 AACCAACAGCAGCTGCACTTGCCTATGGTCTGGACAAGTCTGAAGACAAAGTGTAAGTAC 5218 Query 474894 ATGTT 474898 |||| Sbjct 5219 CTGTT 5223 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3265717507338572