Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fulmarus_20glacialis_20[refseq_20GCF_5F000690835.1_202014-05-13] 57,389 sequences; 1,141,395,646 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value seq11380 230 3e-55 seq26143 84.2 3e-11 >seq11380 Length=17708 Score = 230 bits (254), Expect = 3e-55 Identities = 600/909 (66%), Gaps = 7/909 (1%) Strand=Plus/Minus Query 160045 TGTGTCGCAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATT 160104 ||||||||| || || |||| ||||| || || || ||| || || ||| || | Sbjct 10455 TGTGTCGCAAATACTCTTCCAAACATTTCACTGCAAAAGGGTCGACATCAGTGTCAAACT 10396 Query 160105 TATTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACA 160164 |||| || || | ||||| ||| |||| ||||| | || |||||| ||| || | Sbjct 10395 TATTAGCAAAGAAGTGGTG---GTTTCGTAGCATCCACTTCAGGTCTCCTACCCCAAAAA 10339 Query 160165 CGCAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGT 160224 | ||||| || || | ||| || || |||| || ||||| | || ||||| | || || Sbjct 10338 CACAGACAGAGCGAACGTGAACTCCACTGCATGGTGGGTAGGGTGCACCTTTGGACATGT 10279 Query 160225 CACCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGT 160284 ||||||| ||||||||||||| ||||||||||| | || | |||||| || |||| Sbjct 10278 CACCTTCAAAGTACTGCCACTTGACAAACCTGGCCAGTGCATTCATGTCAGAAACATCGT 10219 Query 160285 ATTTGTACATCAG-GGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCAC 160343 | |||| || || | ||| ||||| || || | || || | ||| | || |||||| Sbjct 10218 ACTTGT-CACTAGAAGAAACTGCACCCGGGACTTCAGGGATTCTCTGAATTGTTGCCCAC 10160 Query 160344 AGGTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGATTAACCTG 160403 |||| || || |||||||| ||||| || | ||| || ||||||| |||| ||| Sbjct 10159 AGGTACTCATCTGGGCTGTAAGTGTCTTTTGCCCACTCAATGAACTTAAGGATTTTGCTG 10100 Query 160404 TCCCGCAGAACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAAT 160463 | |||| || | |||| || ||||| || || || || || || Sbjct 10099 CTTTCTAATACGTATTCTACAAATCTTCTGCCAACTACAAAATAGGCACTACCAGAAAAA 10040 Query 160464 ATCGGTATGGGTATAGGCGGCGTGTCTTTGTCCTGACCGGTGTTAGACACCACTCCTTTC 160523 || || | | ||| || | |||||| ||| ||||| | || | Sbjct 10039 ATTGGAGTACTGAGAGGTGGTAGTTGTTTGTCTATACCTGTGTTCTTTATTTTACCATCA 9980 Query 160524 ACCAGCGCGTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCATGCGTTCCGTCTCT 160583 | | | | || | || |||||||| || || | ||||| ||| || || Sbjct 9979 ATAATCTCATGGTGTTTTTTCCACCTTACTTCTTTATAAACAGGCATTTTTTCGGTTTCC 9920 Query 160584 AGACTGTTGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGAGC 160643 | ||||| |||| | || | ||| | | || || || || |||| ||||| | Sbjct 9919 AAGCTGTTTTCACCTTTAAGGGCTTTTAATTTCTCTACTATTTCCTGGTTGGTCTTTATA 9860 Query 160644 GGAAAGTCGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGGTCGTGCAGG 160703 |||||||| | || || | |||||| | ||| ||||| || | || ||| || Sbjct 9859 GGAAAGTCCATGCCACAGAGGTTTATTAGGTATTTCCAGTTTGAACTTCTTCTGTGGAGA 9800 Query 160704 TCCCTCATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTCT 160763 || ||||||| ||||| ||||||||||| | |||||| ||||| || || || | ||| Sbjct 9799 TCTTTCATGCAGTTAATGTCTGCCTGCACCCTGCTCCATGAAGCATATACAACACTTTCT 9740 Query 160764 AGTTTACTGGCCACAAAGACGTTATCGAAACACGACACGATTCCCACCACCGCCAGAAAG 160823 | | |||| | |||||| ||||| ||||| || || || ||| ||| | ||| || Sbjct 9739 AACTGGCTGGAAATAAAGACATTATCAAAACATGAGACTATCCCCTTCACAG-CAGCAAA 9681 Query 160824 AACATCTTAT-CCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTAGAT 160882 || | || | | ||| ||| || || | ||| || | ||| ||||| || ||||| Sbjct 9680 AAAAGATTCTGGAGACTTCTTGTCAACATGAATGCAGTAAAAGTTTTGAGGGGCATAGAT 9621 Query 160883 GGCCCTGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGCTAT 160942 | || || | || || | |||||| || ||||||| | ||| || ||||| || || Sbjct 9620 TGATCTTAGAAGTCTATCAAGCATCTCAATTTTATGATAAACCACTATTGAGTAAGCAAT 9561 Query 160943 CGGAAACTC 160951 ||||| || Sbjct 9560 TGGAAATTC 9552 >seq26143 Length=900 Score = 84.2 bits (92), Expect = 3e-11 Identities = 76/96 (79%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 160294 TCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACAGGTGTTCGT 160353 || |||| | |||||| || ||||||||||| || | ||||||||||| | ||| || | Sbjct 20 TCTGGGGCATGGCACCCGGCACGCCGGGCATGCGGTTGAGGGTGGCCCAGACGTGCTCAT 79 Query 160354 CGGGGCTGTACGTGTCCTTAGACCATTCCATGAACT 160389 | |||||||| |||||||| | ||| || | ||||| Sbjct 80 CAGGGCTGTAGGTGTCCTTGGCCCACTCGAGGAACT 115 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 576805124591640