Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fulmarus_20glacialis_20[refseq_20GCF_5F000690835.1_202014-05-13] 57,389 sequences; 1,141,395,646 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq1076 170 2e-36 seq34205 165 1e-34 seq40281 129 7e-24 seq48727 98.7 1e-14 >seq1076 Length=1253 Score = 170 bits (188), Expect = 2e-36 Identities = 159/202 (79%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| ||||| ||| | || |||||||| ||||||||||| |||| | || Sbjct 645 GCTTGGCCAGCTCGCCAGGCAGCAAGAGCCGCACGGCCGTCTGGATCTCCCGCGAGGTGA 586 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| |||||||||| || ||||||| | ||||||| |||| | Sbjct 585 TGGTGGAGCGCTTGTTGTAGTGCGCCAGGCGCGAGGCCTCGCCGGCGATGCGCTCGAAGA 526 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| || |||||||||| ||| | |||| ||||||||| |||||||| Sbjct 525 TGTCGTTGACGAAGGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGT 466 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||||||||| ||||||||||| Sbjct 465 GCACCTGCTTCAGCACCTTGTA 444 >seq34205 Length=7499 Score = 165 bits (182), Expect = 1e-34 Identities = 142/176 (81%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 1254369 AGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGTGTTGCGCTTGTTCGAGTGCGCC 1254428 || |||||||| ||||||||||| |||| | ||| ||| ||||||||| |||||||| Sbjct 623 AGCCGCACGGCCGTCTGGATCTCCCGCGAGGTGATGGTGGAGCGCTTGTTGTAGTGCGCC 564 Query 1254429 AGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGACC 1254488 || || ||||||| | ||||||| |||| |||||||||||||| |||||||||| Sbjct 563 AGGCGCGAGGCCTCGCCGGCGATGCGCTCGAAGATGTCGTTGACAAAGGAGTTCATGATG 504 Query 1254489 GACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTA 1254544 ||| | |||| ||||||||| |||||||||||||||||| ||||||||||| Sbjct 503 CCCATGGCCTTGGACGAGATGCCCGTGTCGGGGTGCACCTGCTTCAGCACCTTGTA 448 >seq40281 Length=30348 Score = 129 bits (142), Expect = 7e-24 Identities = 151/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || || | | | |||||||||||| ||||| ||||| || | | || Sbjct 15166 GCTTGGCCAGCTCTCCCGGGAGCAGCAGGCGCACGGCCGTCTGAATCTCCCGGGAGGTGA 15225 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| | || ||||| || ||| || ||||||| || | | Sbjct 15226 TGGTGGAGCGCTTGTTGTAATGGGCCAGGCGAGAGGCTTCTCCAGCGATGCGCTCAAAGA 15285 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||| || || |||||||||| ||| | |||| ||||||||| |||||||| Sbjct 15286 TGTCGTTAACGAAGGAGTTCATGATGCCCATGGCCTTGGAGGAGATGCCGGTGTCGGGGT 15345 Query 1254523 GCACCTGCTTGAGCACCTTGTAGA 1254546 | |||||||| ||||||||||||| Sbjct 15346 GGACCTGCTTCAGCACCTTGTAGA 15369 >seq48727 Length=6332 Score = 98.7 bits (108), Expect = 1e-14 Identities = 80/97 (82%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 1254448 CGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGA 1254507 ||||||| |||| ||||||||||| || |||||||||| ||| | |||| |||| Sbjct 903 CGATGCGCTCGAAGATGTCGTTGACGAAGGAGTTCATGATGCCCATGGCCTTGGACGAGA 962 Query 1254508 TGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTA 1254544 ||||| |||||||||||||||||| ||||||||||| Sbjct 963 TGCCCGTGTCGGGGTGCACCTGCTTCAGCACCTTGTA 999 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6102429589907313