Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fulmarus_20glacialis_20[refseq_20GCF_5F000690835.1_202014-05-13] 57,389 sequences; 1,141,395,646 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq22742 122 7e-22 seq40792 111 1e-18 seq42113 102 6e-16 >seq22742 Length=2510 Score = 122 bits (134), Expect = 7e-22 Identities = 678/1069 (63%), Gaps = 32/1069 (3%) Strand=Plus/Plus Query 281424 CGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGA 281483 ||||| | || || || ||||| |||||||| | ||||| ||||| || || || |||| Sbjct 860 CGGCACTGACGTTCAGGATACCGTTGGCATCGATGTCAAAAGTGACCTCGATCTGGGGGA 919 Query 281484 CCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTT 281543 | || | | || || ||||| ||| | | |||| | ||||| || || || | Sbjct 920 CTCCGCGGGGTGCCGGGGGGATGCCTGTTAGGTCAAATTTGCCCAGCAAGTTGTTGTCCT 979 Query 281544 TAGTGAATTTTCGTTCACCCTCGAAAATTTGGAT-AGTA-ACTACAGTTTGATTATCTGA 281601 | || | || ||||||||| | | |||| || | ||| | | || || ||||| Sbjct 980 TCGTCATAGCTCTCTCACCCTCGTACACCTGGACCAGGACACTGC--TCTGGTTGTCTGA 1037 Query 281602 ATAAGTTGTAAATACTCTGGATTT-TTTACAAGGAATTGTTGTGTTTCTATCAATAATAT 281660 || || || || |||| ||| ||| ||||| || ||||| | | || | | Sbjct 1038 GTAGGTGGTGAAGG-TCTGAGTTTGTTTGGTGGGAATGGTGGTGTTGCGCTTGATGAGAG 1096 Query 281661 TGGTCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGA 281720 ||||| | ||||||||||| || | || || || ||||| |||||||| | || | Sbjct 1097 CAGTCATCACTCCACCAGCTGTCTCGATGCCCAGGGACAGAGGGGTGACATCCAGCAGCA 1156 Query 281721 CAATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCAC 281780 | || || | || ||| | | || | || ||||||||||| | |||||| | Sbjct 1157 GCAGATCCTGCACATTCTCAGACTTGTCTCCCATGAGGATAGCTGCTTGCACAGCAGCGC 1216 Query 281781 CATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAAT 281840 |||| |||||||| |||||||| || | | | || || | |||||||||||| || | Sbjct 1217 CATAAGCAACAGCCTCATCAGGGTTGATGCTCTTGTTGAGCTCTTTACCATTGAAGAAGT 1276 Query 281841 TTGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCAT 281900 || || | | | ||| || ||||| | || || || || | || || || | Sbjct 1277 CCTGTAGCAGCTTTTGGATCTTGGGGATACGGGTAGAGCCACCCACCAGCACTATCTCCT 1336 Query 281901 GCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCAG 281960 | | ||| || || || || | ||| | | | || || || || || || | Sbjct 1337 GGATCTGGCCCTTGTCTAGCTTGGCATCACGCAGAGCCTTCTCCACTGGCTCCAGGGTAC 1396 Query 281961 CTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAA--GA-GTGACATTAT 282017 | | || | || | | || || ||||| || | ||||| || ||| || Sbjct 1397 CACGGAAGAGATCAGCATTGAGCTCCTCGAAGCGGGCACGAGTAATGGAGGTG----TAG 1452 Query 282018 AA-TCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGA--AGATA 282074 || ||||| || ||| | | || || | ||||| ||| ||| || ||||| || | Sbjct 1453 AAGTCAATGCCCTCGTAGAGGGAGTCGATCTCAATGCTAGCTTGTGTAGAAGAGCTGAGA 1512 Query 282075 GTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTG-- 282132 ||| || || || | ||||| ||||| | |||| | | || | ||| ||| Sbjct 1513 GTG--CGCTTTGCCCTCTCACAAGCTGTACGCAGTCGCCTCACTGC--TCGCTTGTTGCC 1568 Query 282133 ATTCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATG--TTACAAGACGA 282190 | | || || | || | |||||| ||||| |||| ||| | || | || Sbjct 1569 AGCAATGTCGCGCTTGTGCTTACGCTTGAATTCTTC--CACAAAATGGTTCACCATGCGG 1626 Query 282191 TTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGT 282250 || ||||| || || || |||| | || | || | || | | || | || | Sbjct 1627 TTGTCAAAGTCCTCTCCACCCAGATGGGTGTCACCAGCTGTGGACTTCACCTCAAAGATG 1686 Query 282251 CCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGT 282310 ||||| |||| | | | | |||||| || || || |||| ||||| || || Sbjct 1687 CCATCCTCAATGGTAAGGATGGACACATCAAAAGTGCCCCCTCCCAAGTCAAAGATGAGC 1746 Query 282311 ACATTCATTTCTTTGTCTTGG------TTTTTATCAAGACCATACGCAAAAGCAGCAGCA 282364 |||||| | ||| | || || || || | ||||| || | |||||| || Sbjct 1747 ACATTCTTCTCTCCAGCCCGGGTACCTTTCTTGTCCAAGCCATAGGCGATAGCAGCTGCT 1806 Query 282365 GTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTG 282424 || || || || ||||| | || |||||||| |||| || | || |||||||||||| Sbjct 1807 GTGGGCTCGTTGATAATACGCATCACATTAAGGCCAGTGATGGTGCCAGCATCTTTAGTG 1866 Query 282425 GCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCAT 282473 || || | || || || || || || ||||| || || || || |||| Sbjct 1867 GCCTGGCGCTGGGAGTCATTGAAGTAAGCAGGCACTGTGATGACAGCAT 1915 >seq40792 Length=30162 Score = 111 bits (122), Expect = 1e-18 Identities = 360/552 (65%), Gaps = 14/552 (3%) Strand=Plus/Minus Query 281777 GCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAA 281836 |||||||| || ||||||||||||||||| | | | || || | ||| |||||||| Sbjct 2128 GCACCATAAGCCACAGCTTCATCAGGATTGATGCTCTTGTTCAGCTCTTTGCCATTGAAG 2069 Query 281837 AAATTTGAAAGAAGTTGTCT-TACCTTAGGAATACGAGATGATCCTCCAACTAATACAAT 281895 |||| || |||| ||| | ||| || ||||||| || || ||||| | || || Sbjct 2068 AAATCCTGCAGCAGTT-TCTGAATCTTTGGGATACGAGTAGACCCACCAACCAGCACGAT 2010 Query 281896 TTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAG 281955 ||||| | ||| ||||| || ||||| | |||| | | ||||| || || || || Sbjct 2009 GTCATGGATCTGCGATTTGTCGAGTTTGGCATCCCGCAGGGCCTTTTCCACAGGATCGAG 1950 Query 281956 ACCAGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACAT- 282014 | | |||| ||| | || ||||| || |||||| ||| | ||| | Sbjct 1949 GGTGCCACGGAACAGGTCAGCGTTCAGCTCTTCAAAGCGAGCTCTGGTA--ATGGACGTG 1892 Query 282015 TATAA-TCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGAT 282073 || || ||||| || || | | |||||||| |||||| | | || || || || Sbjct 1891 TAGAAGTCAATACCCTCATAGAGAGAATCAATTTCAATACTGGCCTGCGTGCTTGACGAC 1832 Query 282074 AGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGG----CTTTTGCTGA 282129 || | ||| || ||||| || ||||| || | || | || | | ||| | || Sbjct 1831 AGAGTACGCTTTGCACGCTCGCATGCAGTGCGGAGGCGACGAACTGCTCTCTTGTTCTCG 1772 Query 282130 TTGATTCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACG 282189 |||| ||| | |||| || | |||||| || ||| | | || | || Sbjct 1771 CTGAT----GTCTTTCTTATGCTTGCGCTTGAATTCAGCAATGAAGTGGTTGACCATGCG 1716 Query 282190 ATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAG 282249 || || || ||||| || ||||| | ||| | |||| || | | | || | || | Sbjct 1715 GTTGTCGAAGTCTTCTCCACCCAAGTGAGTGTCACCTGCAGTGGATTTCACCTCAAAGAT 1656 Query 282250 TCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAG 282309 |||||||||| || || || | |||||| ||| ||||| || | ||||| ||||| Sbjct 1655 GCCATCTTCAATAGTCAGAATTGACACATCAAAGGTGCCACCTCCAAGGTCAAAGATAAG 1596 Query 282310 TACATTCATTTC 282321 |||||| |||| Sbjct 1595 AACATTCCTTTC 1584 Score = 104 bits (114), Expect = 2e-16 Identities = 137/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 282690 CAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATCTCCAATCAGAT 282749 |||||| |||||||||||||| | |||| |||| | || || ||||| || |||| Sbjct 482 CAAAAACTGTATTGGTTGGATTCATTGCAACTTGGTTCTTTGCAGCATCGCCGATCAACC 423 Query 282750 GTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAA 282809 ||||| ||||| || | ||| || ||| || || || ||||| || ||||| |||| Sbjct 422 TCTCTGTGTCTGTGAAAGCAACGTAGCTTGGCGTGGTCCGGTTACCCTGGTCATTGGCAA 363 Query 282810 TAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCAA 282869 | ||||| || || || | ||| ||||||| ||||| | | || || || | ||||| Sbjct 362 TGATTTCCACCTTCCCGTGTTGGAATACACCAACACAGGAATAGGTAGTGCCAAGATCAA 303 Query 282870 TACCAATAGC 282879 | || | ||| Sbjct 302 TTCCGACAGC 293 >seq42113 Length=46900 Score = 102 bits (112), Expect = 6e-16 Identities = 98/126 (78%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 131176 TGTAGTAGCCACAATAGCATTTGGTATGGGTATTAATAAACCGGATGTTAGAGTTGTTAT 131235 ||| || || ||| | |||||||| ||||| || |||||| | ||| | | | ||||| Sbjct 25690 TGTTGTGGCTACAGTGGCATTTGGAATGGGCATCAATAAAGCAGATATCCGGATGGTTAT 25749 Query 131236 TCATTACGGAGCTCCCAAGAATATTGAAGGTTATTATCAAGAAATTGGTAGAGCAGGTCG 131295 ||||||||| || || ||| | || ||| ||||||||||||||||| ||||| ||||| Sbjct 25750 TCATTACGGTGCCCCTAAGGAAATGGAATCCTATTATCAAGAAATTGGGAGAGCTGGTCG 25809 Query 131296 TGATGG 131301 ||||| Sbjct 25810 CGATGG 25815 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3737812842625914