Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fulmarus_20glacialis_20[refseq_20GCF_5F000690835.1_202014-05-13] 57,389 sequences; 1,141,395,646 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq33965 168 1e-36 seq45661 127 4e-24 >seq33965 Length=3108 Score = 168 bits (186), Expect = 1e-36 Identities = 176/231 (76%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || |||| ||||| || | ||||| || ||||| ||||| || || || || || Sbjct 441 CCACCCCTCAGGCGCAGCACAAGATGCAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAC 382 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | || ||||| ||||| || ||||||||||| || || || ||||| || || Sbjct 381 AGGGTGCGCCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGGGGA 322 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || |||||||| || || ||||| || || ||||||||||| || ||| | || || || Sbjct 321 ATGCCTTCCTTGTCCTGGATCTTGGCCTTAACATTTTCAATGGTGTCACTGGGCTCAACC 262 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTATT 82814 ||||| || || ||||||||||||| ||||| ||||| ||||||||| || Sbjct 261 TCCAAGGTGATGGTCTTGCCTGTCAGGGTCTTCACAAAGATCTGCATTTTT 211 Score = 165 bits (182), Expect = 2e-35 Identities = 174/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || |||| ||||| || ||||||||||| ||||| ||||| || || || || | Sbjct 899 TACCACCCCTCAGGCGCAGCACCAAGTGCAGAGTGGATTCCTTCTGGATGTTGTAGTCGG 840 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | || | | || ||||| ||||| || ||||||||||| || || || ||||| || | Sbjct 839 ACAGGGTGCGCCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGGG 780 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || |||||||| || || ||||| || || || || ||||| || ||| | || || | Sbjct 779 GAATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCACTGGGCTCAA 720 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | |||| || || ||||||||||||| ||||| || || |||||||| Sbjct 719 CCTCCAGGGTGATGGTCTTGCCTGTCAGGGTCTTCACGAAGATCTGCAT 671 Score = 161 bits (178), Expect = 2e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || ||||| | |||||| || ||||||||||| ||||| ||||| || || || || || Sbjct 669 CCACCTCTGAGACGCAGCACCAAGTGCAGAGTGGATTCCTTCTGGATGTTGTAGTCGGAC 610 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | || ||||| || || || ||||||||||| || || || ||||| || || Sbjct 609 AGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGGGGA 550 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || |||||||| || || ||||| || || || || ||||| || ||| | || || || Sbjct 549 ATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCACTGGGCTCAACC 490 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||| || || ||||||||||||| ||||| || || |||||||| Sbjct 489 TCCAGGGTGATGGTCTTGCCTGTCAGGGTCTTCACGAAGATCTGCAT 443 >seq45661 Length=137461 Score = 127 bits (140), Expect = 4e-24 Identities = 126/163 (77%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 60149 GCATTATGGTGGTACTATATATCTAAAGGTATAGAATACTTAGATACGGTGTTTTTCATA 60208 || ||||||||||| ||| | |||||||| || ||||| || ||||| || || ||||| Sbjct 27299 GCTTTATGGTGGTATTATGTCTCTAAAGGAATTGAATATTTGGATACAGTATTCTTCATC 27358 Query 60209 CTTAGGAAAAAGTTTAATCAGGTTAGTTTTTTACACGTATATCATCATTTTACTATGTTT 60268 || ||||| || ||||| || ||||||| | || || ||||| |||||||| |||||| Sbjct 27359 CTGAGGAAGAAATTTAACCAAATTAGTTTCCTTCATGTCTATCACCATTTTACCATGTTT 27418 Query 60269 ACTTTAGGATGGGTAGGCATTAAATGGTTTGCCGGAGGTCAAG 60311 || || | ||| | || ||||| ||| |||| || || |||| Sbjct 27419 ACCTTGTGGTGGATTGGTATTAAGTGGGTTGCAGGTGGACAAG 27461 Score = 84.2 bits (92), Expect = 4e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 60443 CAATTCCATATAGCTATAGGACATACCGCTATGTCCATTTACATAGATTGTCCGTTTCCA 60502 || |||||| | |||| || || || || |||| ||||| || |||||||| || || Sbjct 30354 CAGTTCCATGTGACTATTGGCCACACAGCCTTGTCTATTTATATTGATTGTCCTTTCCCT 30413 Query 60503 AAATGGACACAATGGTCAGTTATCATTTATTCTATTACTTTTATATTACTGTTTGGTAAC 60562 ||||||| || ||| || || | ||| || | || || || || |||||||||||| Sbjct 30414 AAATGGATGCACTGGGGTGTAATTTTCTATGCTGTCACCTTCATTTTCCTGTTTGGTAAC 30473 Query 60563 TTCTATTTTAGAACATACAAG 60583 ||||| | | | ||||| ||| Sbjct 30474 TTCTACTATCGGACATATAAG 30494 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981105265834871