Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fulmarus_20glacialis_20[refseq_20GCF_5F000690835.1_202014-05-13] 57,389 sequences; 1,141,395,646 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq10457 138 2e-27 seq29343 129 8e-25 seq35780 87.8 2e-12 >seq10457 Length=264043 Score = 138 bits (152), Expect = 2e-27 Identities = 112/136 (82%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 |||||||||| ||||| | ||| || || || || ||||||||||| ||||| | ||| | Sbjct 10579 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGACCCCTCTTCT 10520 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 | ||||||||||| |||||||| || || ||||||||||||||||| ||||| ||||| | Sbjct 10519 TCAGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAAG 10460 Query 39759 CAACAAGTCTCTCTCC 39774 ||| | |||||| || Sbjct 10459 CAATCACTCTCTCACC 10444 Score = 91.5 bits (100), Expect = 2e-13 Identities = 84/105 (80%), Gaps = 1/105 (1%) Strand=Plus/Minus Query 39988 AAATCTTTC-CGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATA 40046 ||| ||||| | ||| |||||||| || ||||||||||| || ||||||||||||| | Sbjct 5844 AAAGCTTTCTCACCAGGTTTTCATTTACAATTCCATCACTGGCTGCAAAAAATGCCAGAA 5785 Query 40047 CATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATTCCAGT 40091 |||| |||||| ||||||||||| | | ||| || ||||||| Sbjct 5784 CATGAGAAATAAAGTATTTTTCATCTGCTTTCAGCTTGTTCCAGT 5740 >seq29343 Length=28090 Score = 129 bits (142), Expect = 8e-25 Identities = 103/124 (83%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 ||||||||||||| || | |||||||||||| |||||||||||||||| || | || | Sbjct 25169 CCTCATCTCTACTGATGAGTTCGTTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCT 25228 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 | |||||||| || | |||||||| ||||||||||| || ||||| ||||||||||| | Sbjct 25229 TCAGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAAATTCCTTCCACTGCTGCAAAAG 25288 Query 39759 CAAC 39762 | || Sbjct 25289 CTAC 25292 Score = 96.9 bits (106), Expect = 5e-15 Identities = 86/108 (80%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 39311 GACATAACTCCCATTTTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCT 39370 ||||| |||||||| | || |||||||| || |||||||| || ||||| || |||||| Sbjct 23870 GACATGACTCCCATCCTCTGATATTCACCTACTCGTTTCTCAAAGAAATTGGTCTTGCCT 23929 Query 39371 TCCAATGATATATTTTCCATGAAATCAAACGGATTAGTTGCATTATAT 39418 |||| || || ||||||||||| ||||| ||||| ||| || ||| Sbjct 23930 TCCAGAGAGATGTTTTCCATGAAGTCAAAAGGATTCTCTGCTTTGTAT 23977 Score = 84.2 bits (92), Expect = 3e-11 Identities = 82/106 (77%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 39877 ATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAATGGATGTTTTCAATCGC 39936 |||||||| || || || || | ||||| |||||||||||||| || ||||| || || Sbjct 27303 ATCTTTAATGTAGGTGTCAATAAGAAGACTGTACATTTCTGAATGTATATTTTCCATGGC 27362 Query 39937 CATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCT 39982 ||||| || || || ||||| | ||||| || |||||||| ||| Sbjct 27363 AATCTGGAAGCCATAGAAACAACGAGCTTCTGTGATTTGTACTTCT 27408 >seq35780 Length=25771 Score = 87.8 bits (96), Expect = 2e-12 Identities = 122/171 (71%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 68441 TCCATCCGTAGAAATGCATACTTGTTAGTTTGGAATAACTTGGATCGGCTATATGAATAT 68500 |||| || ||||| ||||| || || |||||| ||| | || || || || || || | Sbjct 7091 TCCACCCATAGAAGTGCATGCTGGTGAGTTTGCCATAGTTGGGTTCTGCAATGTGGATGT 7150 Query 68501 TCATCGATTGACTTTGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATAATACTCT 68560 | | || || || ||||| |||||||||||||| ||||| ||||| || | ||| | | Sbjct 7151 TGAGAGACTGGCTCTGATCAATGAAAGCTCCTCTGTCTGCTGCCATCTTGAGGATAGTTT 7210 Query 68561 TTTGAGGAATTTCCCAAATAGTCTTAAAAATCTGTTTGATATCATCTGGAA 68611 | || | || ||||| | |||||| | | || || | ||||| |||| Sbjct 7211 TCTGGGAGATCTCCCACACTGTCTTATAGAGTTGCTTCAAGTCATCAGGAA 7261 Score = 84.2 bits (92), Expect = 3e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 68719 TGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 68778 ||||| || || || | ||||| || ||||| || |||||||| || || || | ||| Sbjct 10832 TGAAACTCTCCTGAGAGGACTCTGCGTGTGTAGATGTTACTGGTGTAGGGCTCAATGGAT 10891 Query 68779 TCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGG 68822 |||||||| |||| || |||||||| || ||||||||||| || Sbjct 10892 TCATTATTGCCCAAGATCTGAGCAGTAGAAGCAGTTGGCATGGG 10935 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686416037385960