Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fulmarus_20glacialis_20[refseq_20GCF_5F000690835.1_202014-05-13] 57,389 sequences; 1,141,395,646 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq29343 114 1e-20 seq43147 107 2e-18 seq10457 86.0 5e-12 >seq29343 Length=28090 Score = 114 bits (126), Expect = 1e-20 Identities = 90/108 (83%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 43913 CAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAAT 43972 |||||||| ||| | ||||||| || ||||| ||||| || || |||||||| |||||| Sbjct 27410 CAAGAAGTACAAATCACAGAAGCTCGTTGTTTCTATGGCTTCCAGATTGCCATGGAAAAT 27351 Query 43973 ATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020 || ||||| ||||||||||||||||| || || || ||||| |||||| Sbjct 27350 ATACATTCAGAAATGTACAGTCTTCTTATTGACACCTACATTAAAGAT 27303 Score = 98.7 bits (108), Expect = 8e-16 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 44123 GGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCG 44182 |||||||| | || || ||||||| |||||||| ||||||||||| || || ||||| Sbjct 25304 GGAGAACGCGTAGTAGCTTTTGCAGCAGTGGAAGGAATTTTCTTTTCTGGCTCTTTTGCA 25245 Query 44183 GCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTA 44242 | || |||||| | |||||| |||| || |||||||| | || ||||| || || | Sbjct 25244 TCAATTTTTTGGCTGAAGAAAAGAGGATTAATGCCTGGACTCACTTTTTCTAACGAACTC 25185 Query 44243 ATAAGTCGTGATGA 44256 || ||| | ||||| Sbjct 25184 ATCAGTAGAGATGA 25171 >seq43147 Length=81232 Score = 107 bits (118), Expect = 2e-18 Identities = 118/157 (75%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 41047 TGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGT 41106 ||||||| ||||| || || ||| | || ||||| || ||| ||||||||| ||| Sbjct 77796 TGATGGCTTTGCCTCCATGCCATGCCCTTTGCCAGTTCTATGTTCTAAATGGTGAATTGT 77737 Query 41107 CATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGA 41166 | || ||| | ||||| || || || |||||||||||||| || || || || || || | Sbjct 77736 CTTGCCAACTCTATCAGAGGTCTGGAGACATGGGACTAGGAGTGCCTTTCAATATTGCCA 77677 Query 41167 GTTATGCTCTGCTCACGTATATGATTGCACACGTTAC 41203 | ||| | |||||||| || |||||||| || || || Sbjct 77676 GCTATTCACTGCTCACATACATGATTGCCCATGTCAC 77640 >seq10457 Length=264043 Score = 86.0 bits (94), Expect = 5e-12 Identities = 101/136 (74%), Gaps = 3/136 (2%) Strand=Plus/Plus Query 44493 AAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAA 44552 |||| || |||||||||||||| |||||||| ||||||| |||||||| || ||||| | Sbjct 16898 AAAATCCTTTTGATTTTATGGAGAATATTTCTCTGGAAGGAAAAACAAATTTCTTTGAGA 16957 Query 44553 AACGCGTTGGAGAATATCAGCGAATGGGCGTCATG---ATAACAAGTGACAATAAATTTA 44609 | || ||| ||| ||||| || | | || ||| ||||| |||||| || | Sbjct 16958 AGCGGGTTTCAGAGTATCAACGTTTTGCTGTTATGGCAGAAACAATGGACAATGTCTTCA 17017 Query 44610 CTACGGATGAAGATTT 44625 || ||||| |||||| Sbjct 17018 CTCTGGATGCAGATTT 17033 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397178007970945