Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fulmarus_20glacialis_20[refseq_20GCF_5F000690835.1_202014-05-13] 57,389 sequences; 1,141,395,646 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq49546 176 6e-39 seq24494 122 1e-22 >seq49546 Length=21408 Score = 176 bits (194), Expect = 6e-39 Identities = 184/242 (76%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 9244 ATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGA 9303 ||||| | ||| || |||||||| ||||| ||| ||| |||||||| || |||||||| Sbjct 3383 ATGAGCCTAGTCGTTTGGAACAGCTGCTCATCATCCCACTCTGGATGCTCCTGTTTCAGG 3324 Query 9304 ACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGT 9363 | || || |||| |||||||||||| ||||| || || ||||||||||| | || || Sbjct 3323 ATGTCACAGACCCGGTTGTGTTCCCTCAGCCATATCGTAGCGTACATCATCAAGCCTGGG 3264 Query 9364 ACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGGGAGGA 9423 |||| ||||| |||| || ||||||| | ||| || ||| || | | ||||| Sbjct 3263 ACCAAACCAAACACCTCCTGCCCGACAGAAAACTGCAAGTGTTCAGGTATGTGAGGAGGG 3204 Query 9424 TAGATCATGTGCACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCGTCAATCATC 9483 |||||||| | | |||| ||| || |||| || ||||||||||| |||||||||||| Sbjct 3203 TAGATCATTTCCGCCTGAGTGTCCTTCACCGTTGGTGGATACATTTCGCCGTCAATCATC 3144 Query 9484 TG 9485 || Sbjct 3143 TG 3142 Score = 159 bits (176), Expect = 5e-34 Identities = 223/309 (72%), Gaps = 3/309 (1%) Strand=Plus/Minus Query 8289 GGAACGCGGCCAACGGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAGTTGCGC 8348 |||| || | || ||||| || || || ||| | |||| || ||| | | || Sbjct 5430 GGAAAGCAGTGAAAGGACAGCCTTTCACATTGTTGCAGATGAGCTTCTGTAAGGAGGCAG 5371 Query 8349 TCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGG 8408 | |||| || | || ||||| | ||| ||||||||||| |||||||||||| | |||| Sbjct 5370 TATTGATTATTTCAAAGCCCACTTTTCCACCGAAGGTGCTAGGCTTCCAGTACTCGGGGG 5311 Query 8409 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGC 8468 ||||||| |||| |||| || ||||| || ||||| || || || | ||| | || Sbjct 5310 AGCAGATAGCGTTTCCCATCAGTCCTTTCAGAGAGAAGGGTGCTCCAATCTCCACCATTG 5251 Query 8469 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAAT-CCGGTGTACAGCTCC 8527 | |||||||||||||| || || |||||||| || ||||| || | |||||||||| Sbjct 5250 TTTCACCGAAGATGGCACCTGGTCGTGGCTTTTCTAC-AAGAAGGCCTGGGTACAGCTCC 5192 Query 8528 ACAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTGT- 8586 | ||| || | |||||| ||||| | ||||| || || || || ||||||||||| Sbjct 5191 ATAGCATCAATGTCTCCATAAAGCTCTTCCAGTTCAGCTGCCATTTCTTTTTCTCCTGTA 5132 Query 8587 TTTATTAAT 8595 ||||| || Sbjct 5131 ATTATTGAT 5123 >seq24494 Length=17256 Score = 122 bits (134), Expect = 1e-22 Identities = 181/254 (71%), Gaps = 2/254 (1%) Strand=Plus/Plus Query 9232 TCCCCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGT 9291 || ||||| | |||||| |||| |||||||| || ||||| || ||||| ||||| Sbjct 16617 TCACCGATGAGGATGAGACGAGCCGTCTGGAAGAGCTGCTCATCGCTCCAGGTGGGATGC 16676 Query 9292 TCTTGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATC 9351 || ||||||| | ||||| || | |||||| || | ||||||| ||||||||||| Sbjct 16677 TCCCGTTTCAGTATGTCGCAGACGCGGTTGTGCTCGCGCAGCCAGAGCGTGGCGTACATG 16736 Query 9352 ATGAGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGC 9411 |||||| || | ||| ||||| |||| || || | ||||| || | | | ||| Sbjct 16737 CAGAGCCCCGGCAGCAGCCCAAACACCTCCTGCCCCATCGCCAGCTGCTTCTCCTTGGGG 16796 Query 9412 ACTTCGGGAGGATAGATCATGTGCACCTGGA-CGTCTTTGACCGAGGGGGGATACATTTC 9470 || | || || |||| |||||| | ||||| | || ||||| |||||| |||| || Sbjct 16797 ACGGCAGGTGGGTAGACCATGTGGA-CTGGAGCATCGGTGACCATGGGGGGGTACACCTC 16855 Query 9471 ACCGTCAATCATCT 9484 || || | || || Sbjct 16856 TCCATCCACCACCT 16869 Score = 102 bits (112), Expect = 1e-16 Identities = 130/179 (73%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 8373 CTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGTTCGCCATGAGGC 8432 |||| ||||| || ||||| ||||||||| | |||||||||||| || | | ||| | Sbjct 14157 CTCCACCGAATGTACTGGGTTTCCAGTACTCTGGGGAGCAGATGGGATTTCCAAGGAGCC 14216 Query 8433 CTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGATGGCGTTGGGAC 8492 | || ||||| |||||||| |||| ||| | ||||| || || || || | ||||| Sbjct 14217 CCTTCAGGGAAAACGGAGCTCCCATCTCCACCATGCTTTCTCCAAAAATACCATTGGGTT 14276 Query 8493 GGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACGTCTCCGTAAAGG 8551 |||| || || | || || || | || | ||||| ||| || | |||||| || ||| Sbjct 14277 GGGGTTTCTCAAGCAGCAAGCCTGGATAAAACTCCAGAGCATCAATGTCTCCATACAGG 14335 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716362539466560