Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fulmarus_20glacialis_20[refseq_20GCF_5F000690835.1_202014-05-13] 57,389 sequences; 1,141,395,646 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq33965 141 2e-28 >seq33965 Length=3108 Score = 141 bits (156), Expect = 2e-28 Identities = 165/221 (75%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || |||||||| || || ||||| || || |||||||| ||||| || || ||| Sbjct 446 CAGATCTTCGTGAAGACCCTGACAGGCAAGACCATCACCCTGGAGGTTGA--GCCCAGTG 503 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| ||||||||||| ||||| |||||||| ||||| || || || || |||| Sbjct 504 ACACCATTGAGAACGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCCGATCAGC 563 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| || || || ||||| |||||||| | || || |||| || ||| Sbjct 564 AGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGGCGCACCCTGTCCGACTACAACA 623 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 |||| || ||||| || ||||| | || || | |||||| Sbjct 624 TCCAGAAGGAATCCACTCTGCACTTGGTGCTGCGTCTCAGA 664 Score = 134 bits (148), Expect = 3e-26 Identities = 156/207 (75%), Gaps = 5/207 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || |||||||| || || ||||| || || |||||||| ||||| || || ||| Sbjct 674 CAGATCTTCGTGAAGACCCTGACAGGCAAGACCATCACCCTGGAGGTTGA--GCCCAGTG 731 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| ||||||||||| ||||| |||||||| ||||| || || || || |||| Sbjct 732 ACACCATTGAGAACGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCCGATCAGC 791 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| || || || || || |||||||| | || || |||| || ||| Sbjct 792 AGAGGCTGATCTTTGCTGGCAAGCAACTGGAAGATGGGCGCACCCTGTCCGACTACAACA 851 Query 178102 TCCAAAAAGAATCAACACTGCATCTTG 178128 |||| || ||||| || ||||| |||| Sbjct 852 TCCAGAAGGAATCCACTCTGCA-CTTG 877 Score = 123 bits (136), Expect = 6e-23 Identities = 159/217 (73%), Gaps = 7/217 (3%) Strand=Plus/Plus Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974 ||||||| | || || ||||| || || ||||| || || |||||| | ||||| || Sbjct 212 AAAATGC---AGATCTTTGTGAAGACCCTGACAGGCAAGACCATCACCTTGGAGGTTGA- 267 Query 177975 AGCTCAG--ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTC 178032 || ||| ||||||| || || || || ||||| |||||||| ||||| || || | Sbjct 268 -GCCCAGTGACACCATTGAAAATGTTAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCC 326 Query 178033 CGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCG 178092 | || ||||| | || ||||| || || || || || |||||||| | || || ||| Sbjct 327 CCGATCAGCAGAGGCTGATCTTTGCTGGCAAGCAACTGGAAGATGGGCGCACCCTGTCCG 386 Query 178093 ATTATAACGTCCAAAAAGAATCAACACTGCATCTTGT 178129 | || ||| |||| || ||||| || ||||||||||| Sbjct 387 ACTACAACATCCAGAAGGAATCCACCCTGCATCTTGT 423 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1202846100586466