Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gallirallus_20okinawae_20[genbank_20GCA_5F002003005.1_202017-02-09] 768,680 sequences; 1,114,530,436 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq102374 89.7 5e-13 seq92776 84.2 2e-11 >seq102374 Length=14565 Score = 89.7 bits (98), Expect = 5e-13 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 16226 TCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTT 16285 || |||||||| |||||||| ||||| || || | || ||||| |||| ||||| Sbjct 3396 TCATCTCTGCTAATAAGTTCATTGGAGAAGGTCAGTCCAGGCATCAGGCCTCTCTTCTTC 3455 Query 16286 AACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGC 16344 | ||| ||||| |||||||| || ||||||||||| || || ||||| | ||||| || Sbjct 3456 AGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAGGC 3514 >seq92776 Length=9696 Score = 84.2 bits (92), Expect = 2e-11 Identities = 78/99 (79%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 16472 ATATACGTATCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGA 16531 || || || ||||| || | ||||||||||||||| |||||||| || ||||| ||||| Sbjct 2384 ATGTAGGTGTCAATTAGGAGACTGTACATTTCTGAATGTATGTTTTCCATGGCAATCTGG 2325 Query 16532 AATCCATAGAAGCATCGAGCCTCCGCTATTTGTACTTCC 16570 || |||||||| || || || || | | ||| |||||| Sbjct 2324 AAGCCATAGAAACAGCGGGCTTCTGTGACTTGCACTTCC 2286 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506500474737600