Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gallirallus_20okinawae_20[genbank_20GCA_5F002003005.1_202017-02-09] 768,680 sequences; 1,114,530,436 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq138864 113 3e-20 seq51765 96.9 2e-15 >seq138864 Length=1742 Score = 113 bits (124), Expect = 3e-20 Identities = 91/110 (83%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 4290 CTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGG 4349 ||| || ||| ||||||| || | ||||||||| ||||||| || || ||||||||||| Sbjct 1175 CTTGAGCTCCCTGCTGAGCACTATGTTAATTCTGTCTTTTAATGGACGATTCTTCTCAGG 1116 Query 4350 AATTGAGAACCAAGTCTTTTTACCCATAATCACTAAATTCTGTTTATCTG 4399 ||| |||||||| || ||||||||||| |||| | |||||||||| ||| Sbjct 1115 AATGGAGAACCAGGTTTTTTTACCCATTATCAATGCATTCTGTTTACCTG 1066 >seq51765 Length=19914 Score = 96.9 bits (106), Expect = 2e-15 Identities = 110/148 (74%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 102033 CTTTATATTCTGCTCCGAAATGCCTCCACTGAAATCCATACACAGGTCCAAGATCTCCTT 102092 |||| ||||||||||| || ||||||||||| || ||||| || ||||| | ||| || | Sbjct 7832 CTTTGTATTCTGCTCCAAAGTGCCTCCACTGGAAACCATAAACTGGTCCCAAATCACCCT 7773 Query 102093 CATCTCTGTCATAAAAACCAAGTTTATCTAAAAATGATCTAGATCCATTCGCATCCCAAA 102152 | |||||| | ||||| ||||||| | || | |||||||| |||||||||| Sbjct 7772 CCTCTCTGGTACTGAAACCCTGTTTATCCAGGAACTCACGTGATCCATTAGCATCCCAAA 7713 Query 102153 TGTGCACGCCAGCTGCTGATAGCTCTTT 102180 | | || || ||| || |||||||| Sbjct 7712 TCTTTACACCCTTTGCAGAGAGCTCTTT 7685 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357866894898680