Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gallirallus_20okinawae_20[genbank_20GCA_5F002003005.1_202017-02-09] 768,680 sequences; 1,114,530,436 total letters Query= NC_001731.1 Length=190289 Score E Sequences producing significant alignments: (Bits) Value seq351562 154 2e-32 seq124109 109 7e-19 >seq351562 Length=513 Score = 154 bits (170), Expect = 2e-32 Identities = 217/305 (71%), Gaps = 0/305 (0%) Strand=Plus/Plus Query 83089 GGTCTGGCAGCGGTGGCTGTACCTGCGCACGGGCGTGCCGTCAGCACCCACCAAGAACTT 83148 ||||| | || | ||||||| | | | |||| |||||| | || | | |||||| Sbjct 143 GGTCTCGAAGTGCCGGCTGTAGCGCCTGAAGGGCACGCCGTCGGGGCCGATGAGGAACTT 202 Query 83149 CTCGAAGTTCCAGGCCACGTCGTTGCGGCACACTGGAGACCAGGCAATGAGCTGGGGGTC 83208 |||||||||||||| | |||||||||||| || || |||||| ||| ||| |||| Sbjct 203 CTCGAAGTTCCAGGAGATGTCGTTGCGGCAGACCGGGGACCAGATGATGTACTGCGGGTT 262 Query 83209 GCTCACGAGCGTGCTCATGTCGTCGCTAGGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAA 83268 | ||| |||| | ||||||| || ||||| |||||| ||||||| ||| Sbjct 263 GGTCATCAGCGAGGAGGGGTCGTCGTGGGGGAAGGGCAGCGCCTCTTTCAGGAAGGTGAA 322 Query 83269 GAGCGGATGTGCCCTTGCACCGTTGACCTCGCACTTCTCGAAGAGCATAAAGTTCGGCTC 83328 ||| || || || | ||||| ||||||||||||||||| | || || || || | Sbjct 323 GAGGGGGTGAGCGTTCTTCCCGTTCACCTCGCACTTCTCGAACATGATGAAATTGGGTTT 382 Query 83329 GAAGCCGTTCCCAGGACGGACGTGCTTCAGGGAAGGCAAGATCTCGGCATTCTGGGCGTT 83388 | | ||||| || ||||| ||||||| ||| || ||| |||||| | ||| ||| || Sbjct 383 GTACCCGTTGCCCGGACGAACGTGCTCCAGCGAGCGCAGGATCTCCTCGTTCGTGGCATT 442 Query 83389 TTCCT 83393 ||||| Sbjct 443 TTCCT 447 >seq124109 Length=2880 Score = 109 bits (120), Expect = 7e-19 Identities = 214/304 (70%), Gaps = 18/304 (6%) Strand=Plus/Plus Query 83065 CTCGATGTCGGGCTCCAC--GGCCAGGGTCTGGCA-GCGGTGGCTGTACCTGCGCACGGG 83121 || |||||||||||||| || ||| | |||| |||| ||||||| | || | ||| Sbjct 1484 CTGGATGTCGGGCTCCAGCTGGGCAGTG---GGCATGCGGGGGCTGTAGCGCCGGAAGGG 1540 Query 83122 CGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGGCACAC 83181 || |||| ||| |||| ||||||||| |||||||||| | ||| ||| | ||| Sbjct 1541 TTCCCCCTCAGGACCTACCAGGAACTTCTCAAAGTTCCAGGAGATGTCAGAGCGCCGCAC 1600 Query 83182 TGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGC-GTGCTCATGTCGTCGCTAGGCG 83240 || |||| | | || |||| ||| ||| || ||||| ||||| || | Sbjct 1601 CGGGCTCCAGACGAGGAAGCGGGGCTCGGTCATCAGGTGTGCTGCC-TCGTCAGCCGGTG 1659 Query 83241 CCGGCAGG---GCCTCTCGTAGGAAGGCGAAGAGCGGATG--TGCCCTTGCACCGTTGAC 83295 | |||||| |||| || ||| |||| |||| || || || ||| || ||||| || Sbjct 1660 CAGGCAGGTGAGCCT-TC--AGGTAGGCAAAGACGGGGTGGGTGTCCT-GC-CCGTTCAC 1714 Query 83296 CTCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTT 83355 || |||||||| |||||| | ||||| ||||||||||| || || || |||| ||| Sbjct 1715 CTGGCACTTCTGGAAGAGGGTGAAGTTGGGCTCGAAGCCACCTCCCGGCCGCACGTACTT 1774 Query 83356 CAGG 83359 |||| Sbjct 1775 CAGG 1778 Score = 104 bits (114), Expect = 3e-17 Identities = 116/153 (76%), Gaps = 3/153 (2%) Strand=Plus/Plus Query 83391 CCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTAGGC 83450 |||||| || || ||||| || ||||| || ||||| ||||||| ||| | ||| Sbjct 1935 CCTGGTAGCCAAATTGGTTGCAGGGGAAACCCAGCACGACCAGCCGCCGGGGA--TAGCG 1992 Query 83451 GCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACGCTA 83510 | | || |||||||| | ||| ||||| ||||| || ||| | ||||||||||| || | Sbjct 1993 GGCT-TGGAGCTCGTTGAGCTGGGTGTAATCCCGCACTGTGGTGCCTCAGAGGGATGCCA 2051 Query 83511 CGTTCTCGATGAGCAAGACCCGGCCCCGTAAGA 83543 ||||||| ||||| | || |||||||| |||| Sbjct 2052 CGTTCTCAATGAGGACCACTCGGCCCCGGAAGA 2084 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 602947175947200