Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gallirallus_20okinawae_20[genbank_20GCA_5F002003005.1_202017-02-09] 768,680 sequences; 1,114,530,436 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq92776 120 3e-22 seq569220 95.1 1e-14 seq102374 84.2 2e-11 >seq92776 Length=9696 Score = 120 bits (132), Expect = 3e-22 Identities = 95/114 (83%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 |||||||||||||| || ||||| ||||| ||||| || |||||||| || |||| ||| Sbjct 1402 GAGCCGCTGCTGCGGGACAACCCGCGCCGCTTCGTCATCTTCCCCATCCAGTACCACGAC 1461 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTG 116689 || |||| |||||||| ||||||||||| || |||||||| | ||||||||| Sbjct 1462 ATTTGGCAGATGTACAAGAAGGCCGAGGCTTCCTTCTGGACGGCGGAGGAGGTG 1515 >seq569220 Length=106 Score = 95.1 bits (104), Expect = 1e-14 Identities = 72/85 (85%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 40795 ATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACC 40854 |||||| |||||||||| || || |||| |||||| || |||||||| |||| |||||| Sbjct 105 ATCCCCCCGGACCAGCAGCGCCTGATCTTCGCGGGGAAGCAGCTGGAGGACGGCCGCACC 46 Query 40855 CTCAACGACTACAACATCCAGAAGG 40879 ||| ||||||||||||||||||| Sbjct 45 CTCGCGGACTACAACATCCAGAAGG 21 >seq102374 Length=14565 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 117042 TGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTT 117101 |||| ||||| || || || || ||| ||||||||||||| || || || ||||||| Sbjct 3519 TGGTTGCCTTTGCTGCAGTTGAAGGCATCTTCTTTTCGGGTTCCTTTGCTGCTATATTTT 3460 Query 117102 GGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGG 117161 |||| ||||| | ||||| ||||| || ||||| ||| ||| || || || ||| | Sbjct 3459 GGCTGAAGAAGAGAGGCCTGATGCCTGGACTGACCTTCTCCAATGAACTTATTAGCAGAG 3400 Query 117162 ACGAGG 117167 | |||| Sbjct 3399 ATGAGG 3394 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 510268716316800