Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gallirallus_20okinawae_20[genbank_20GCA_5F002003005.1_202017-02-09] 768,680 sequences; 1,114,530,436 total letters Query= NC_001987.1 Length=108409 Score E Sequences producing significant alignments: (Bits) Value seq51765 100 2e-16 >seq51765 Length=19914 Score = 100 bits (110), Expect = 2e-16 Identities = 115/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 97117 GTGACATGGGCGATCATACAAGTTAATAGAGAATAGCTAGCAATGTTAAAAGGCACCCCT 97176 ||||||||||| |||||| | || | || || ||||| ||||| || |||||||| ||| Sbjct 11186 GTGACATGGGCAATCATATATGTGAGCAGTGAGTAGCTGGCAATATTGAAAGGCACTCCT 11127 Query 97177 AGTCCCATATCAGCTGATCTTTGATATAACTGACAGGAAAGCTTTCCATCACACACATAA 97236 ||||||||||| ||||||| ||||| | || || || || | |||| ||||| Sbjct 11126 AGTCCCATATCTCCTGATCTCTGATAGAGTTGGCAAGACAGTTCGCCATTTAGAACATAG 11067 Query 97237 AACTGACTCAATACATGACAGGGGGGCAACGCCAT 97271 ||||| | | |||| || || ||||| ||||| Sbjct 11066 AACTGGCAAAGGGCATGGCACGGAGGCAAAGCCAT 11032 Score = 93.3 bits (102), Expect = 3e-14 Identities = 109/147 (74%), Gaps = 8/147 (5%) Strand=Plus/Minus Query 97402 TATTCTGCTCCAAAATGCCTCCATTGGAATCCATAAACAGGTCCAAGGTCTCCTTCTTCT 97461 |||||||||||||| |||||||| ||||| |||||||| ||||| | || || || ||| Sbjct 7827 TATTCTGCTCCAAAGTGCCTCCACTGGAAACCATAAACTGGTCCCAAATCACCCTCCTCT 7768 Query 97462 CTATCACAGAAACCAAGCTTATCTAAATAGGACCT----AGATCCATTTGCATCCCAAAT 97517 || || |||||| | ||||| |||| || |||||||| ||||||||||| Sbjct 7767 CTGGTACTGAAACCCTGTTTATC----CAGGAACTCACGTGATCCATTAGCATCCCAAAT 7712 Query 97518 GTGCACACCAGATGCTGCAAGCTCTTT 97544 | ||||| ||| | |||||||| Sbjct 7711 CTTTACACCCTTTGCAGAGAGCTCTTT 7685 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 343535227787600