Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gallirallus_20okinawae_20[genbank_20GCA_5F002003005.1_202017-02-09] 768,680 sequences; 1,114,530,436 total letters Query= NC_002229.3 Length=177874 Score E Sequences producing significant alignments: (Bits) Value seq32715 181 1e-40 >seq32715 Length=2510 Score = 181 bits (200), Expect = 1e-40 Identities = 134/157 (85%), Gaps = 7/157 (4%) Strand=Plus/Plus Query 1930 AGGCCGCGGTCGGCCGGCACCCGCCATTGCCGCCGCGAAGAGTTCGCCTCTGTCAGCCTC 1989 |||||||||||||||||| ||||||| ||||||||||||||||||| ||||||||||||| Sbjct 2354 AGGCCGCGGTCGGCCGGCTCCCGCCACTGCCGCCGCGAAGAGTTCGTCTCTGTCAGCCTC 2413 Query 1990 GGCGGCGCCCGGGAGATGCGgcgcgcggccccgcgc-------ccccagcagagcaacac 2042 ||||||| ||||||| | || |||| |||||||| |||||||||||||| || Sbjct 2414 GGCGGCGGCCGGGAGCGGAGGGGCGCTCCCCCGCGCCGGGGGACCCCAGCAGAGCAAAAC 2473 Query 2043 gggagcggcgcccccggggcaacccccgcgccccccT 2079 |||||||||||||||||| | ||| |||||| |||| Sbjct 2474 GGGAGCGGCGCCCCCGGGCCGACCGCCGCGCTTCCCT 2510 Score = 181 bits (200), Expect = 1e-40 Identities = 134/157 (85%), Gaps = 7/157 (4%) Strand=Plus/Minus Query 139541 Aggggggcgcgggggttgccccgggggcgccgctcccgtgttgctctgctgggg------ 139594 |||| |||||| ||| | |||||||||||||||||||| |||||||||||||| Sbjct 2510 AGGGAAGCGCGGCGGTCGGCCCGGGGGCGCCGCTCCCGTTTTGCTCTGCTGGGGTCCCCC 2451 Query 139595 -gcgcggggccgcgcgcCGCATCTCCCGGGCGCCGCCGAGGCTGACAGAGGCGAACTCTT 139653 |||||||| |||| || | ||||||| |||||||||||||||||||| ||||||||| Sbjct 2450 GGCGCGGGGGAGCGCCCCTCCGCTCCCGGCCGCCGCCGAGGCTGACAGAGACGAACTCTT 2391 Query 139654 CGCGGCGGCAATGGCGGGTGCCGGCCGACCGCGGCCT 139690 |||||||||| ||||||| |||||||||||||||||| Sbjct 2390 CGCGGCGGCAGTGGCGGGAGCCGGCCGACCGCGGCCT 2354 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 563600902435200