Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gallirallus_20okinawae_20[genbank_20GCA_5F002003005.1_202017-02-09] 768,680 sequences; 1,114,530,436 total letters Query= NC_002641.1 Length=159160 Score E Sequences producing significant alignments: (Bits) Value seq68887 205 9e-48 >seq68887 Length=8574 Score = 205 bits (226), Expect = 9e-48 Identities = 292/414 (71%), Gaps = 6/414 (1%) Strand=Plus/Plus Query 125103 GCTTACCCATCCGCCGTGCTCCCGCAACCACTCGCCCTGCTCTTCGGCCAGGTACGCGGC 125162 ||| ||||||||||||||| || || |||||||||| |||| ||||||||||| ||||| Sbjct 8078 GCTCACCCATCCGCCGTGCGCCTCCAGCCACTCGCCCCGCTCCTCGGCCAGGTAGGCGGC 8137 Query 125163 CAGCGCTGCGGCCAAGCGGCTTGGCCCTTCCTCACAGCCGTTTTCGTACAGCGCCGTTGC 125222 ||| || ||||||| | || ||||| || ||||| ||| |||||| | | Sbjct 8138 CAGTGCGGCGGCCAGGAAGCGCGGCCCGTCGCTGCAGCCCCGCTCGGCCAGCGCGGCGAC 8197 Query 125223 CAGCGAGCCGCCGAGGACTATGGTCGCCAGGCATCGACCCCAGTTGAAGCCGCTTCCGGA 125282 ||||| |||| | | ||| | |||||| || |||||||||| ||||| ||| Sbjct 8198 CAGCGTGCCGGCAAAGACCACCAGCGCCAGCAGCCGGCCCCAGTTGAGGCCGCCGTCGGC 8257 Query 125283 GTTCAATT---CAGACACCACACTTTGCAGCGCCGACAACGCTGCCTGCGTGCCGCCGCT 125339 | || | | | |||| || ||||||||| ||| | ||| || | | Sbjct 8258 CTCCAGCTGCGCCGCCACCCGCCTCAGCAGCGCCG---CCGCCTCTCGCGGCTCGGCCCG 8314 Query 125340 CGCTAACGGCGCGCAGGAGCGAAAGAAGGGCCTCTCTCGCCGCTCCAGCTCGGCCGCCGC 125399 || | ||||||||||||||| |||||||||| ||| || ||||||||||||||||||| Sbjct 8315 GGCCAGCGGCGCGCAGGAGCGGAAGAAGGGCCGCTCCTGCAGCTCCAGCTCGGCCGCCGC 8374 Query 125400 TCGCCGNNNNNNNNNNNNNGTAGGACTCGGCGGCGGCCCTTCCTTGCCGCAGCAGTGCTG 125459 ||||| || || || || ||| || | | |||| || |||||| Sbjct 8375 CCGCCGGAGCGTGGCCGCCGTGGGGCTGGGGGGCAGCGCGGCGCCGCCGGCGCGGTGCTG 8434 Query 125460 GAAGTAATCCTCCAGCAGCAACGCCGTTTCTTCCTTCAGGGAGTCAGCCATGGC 125513 |||||| || |||||||||| |||||| || |||||||| ||| | | |||||| Sbjct 8435 GAAGTAGTCTTCCAGCAGCAGCGCCGTCTCCTCCTTCAGCGAGCCCGGCATGGC 8488 Score = 187 bits (206), Expect = 3e-42 Identities = 288/414 (70%), Gaps = 6/414 (1%) Strand=Plus/Minus Query 157083 GCCATGGCTGACTCCCTGAAGGAAGAAACGGCGTTGCTGCTGGAGGATTACTTCCAGCAC 157142 |||||| | | ||| |||||||| || |||||| |||||||||| || |||||||||||| Sbjct 8488 GCCATGCCGGGCTCGCTGAAGGAGGAGACGGCGCTGCTGCTGGAAGACTACTTCCAGCAC 8429 Query 157143 TGCTGCGGCAAGGAAGGGCCGCCGCCGAGTCCTACGGCGGCAGAGCTGCGGCGAGCNNNN 157202 || |||| | | || ||| || || || |||||||| ||| ||||| || Sbjct 8428 CGCGCCGGCGGCGCCGCGCTGCCCCCCAGCCCCACGGCGGCCACGCTCCGGCGGGCGGCG 8369 Query 157203 NNNNNNNNNGAGCGGCGAGAGAGGCCCTTCTTTCGCTCCTGCGCGCCGTTAGCGAGCGGC 157262 |||| || ||| |||||||||| ||||||||||||||| | || | | | Sbjct 8368 GCCGAGCTGGAGCTGCAGGAGCGGCCCTTCTTCCGCTCCTGCGCGCCGCTGGCCCGGGCC 8309 Query 157263 GGCACGCAGGCAGCGTTGTCGGCGCTGCAAAGTGTGGTGTCTG---AATTGAACTCCGGA 157319 | ||| | ||| ||||||||| || |||| | | | || | ||| Sbjct 8308 GAGCCGCGAGAGGCGG---CGGCGCTGCTGAGGCGGGTGGCGGCGCAGCTGGAGGCCGAC 8252 Query 157320 AGCGGCTTCAACTGGGGTCGATGCCTGGCGACCATAGTCCTCGGCGGCTCGCTGGCAACG 157379 ||||| |||||||||| || |||||| | ||| | | |||| |||||| | Sbjct 8251 GGCGGCCTCAACTGGGGCCGGCTGCTGGCGCTGGTGGTCTTTGCCGGCACGCTGGTCGCC 8192 Query 157380 GCGCTGTACGAAAACGGCTGTGAGGAAGGGCCAAGCCGCTTGGCCGCAGCGCTGGCCGCG 157439 |||||| ||| ||||| || ||||| || | ||||||| || |||||||| Sbjct 8191 GCGCTGGCCGAGCGGGGCTGCAGCGACGGGCCGCGCTTCCTGGCCGCCGCACTGGCCGCC 8132 Query 157440 TACCTGGCCGAAGAGCAGGGCGAGTGGTTGCGGGAGCACGGCGGATGGGTAAGC 157493 ||||||||||| |||| |||||||||| || || ||||||||||||||| ||| Sbjct 8131 TACCTGGCCGAGGAGCGGGGCGAGTGGCTGGAGGCGCACGGCGGATGGGTGAGC 8078 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 504291505536000