Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gallirallus_20okinawae_20[genbank_20GCA_5F002003005.1_202017-02-09]
768,680 sequences; 1,114,530,436 total letters
Query= NC_002665.1
Length=108873
Score E
Sequences producing significant alignments: (Bits) Value
seq14356 378 5e-100
seq42931 91.5 1e-13
>seq14356
Length=31392
Score = 378 bits (418), Expect = 5e-100
Identities = 657/950 (69%), Gaps = 4/950 (0%)
Strand=Plus/Minus
Query 107675 GTTCAT-ACAGTTCCCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGG 107733
|||||| ||| ||||| |||||| | || || ||| |||||||| |||||||| ||||
Sbjct 31257 GTTCATCACA-TTCCCGCTGAGTCAGGAGGAAGCAGAGTTCCCCATCGCCTACTCCATGG 31199
Query 107734 TGGTCCATGAGAAGATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGA 107793
| |||| || || ||||| | ||||| ||||| ||||| | ||||| |||| ||||
Sbjct 31198 TCATCCACGACAAAATTGAGATGTTTGAGCGGCTCCTGCGGTCTCTGTATACCCCCCAGA 31139
Query 107794 ACATATACTGTGTCCACGTGGATGTGAAGTCCCCAGA-GACTTTCAAAGAGGCGGTCAAG 107852
|| | ||||| ||||| | || |||||| ||| ||||| || ||||| || |
Sbjct 31138 ACGTCTACTGCATCCACATCGACAACAAGTCCTCAGCTGACTTCCAG-GAGGCCGTGCGG 31080
Query 107853 GCCATTATTTCCTGCTTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTAT 107912
||||| | ||||||||||||| ||||| |||| || ||| |||||| |||
Sbjct 31079 GCCATCGTAGCCTGCTTCCCCAACGTCTTTGTGGCTAGCCGCCTGGAAAAGGTGGTCTAT 31020
Query 107913 GCCTCCTGGTCCAGAGTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCA 107972
|||||||||||| | |||| |||||||| ||||| ||| | ||| || | |||||| |
Sbjct 31019 GCCTCCTGGTCCCGGCTGCAGGCTGACCTCAACTGCATGCAGGACCTGTTGCAGAGCCCC 30960
Query 107973 GTGCCATGGAAGTACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCC 108032
| |||||| || | || || || || || || || |||||||| |||||||||||
Sbjct 30959 ATACCATGGCGCTATGTCCTCAACACCTGTGGCACTGATTTCCCCATCAAGACCAATGCT 30900
Query 108033 GAGATGGTCCTGGCCCTCAAGATGTTGAAGGGTAAGAACAGTATGGAGTCTGAGGTACCT 108092
||||| |||| | | | ||| || || |||| | || || ||||| || ||| ||
Sbjct 30899 GAGATCGTCCGTGTCTTGAAGGTGCTGCAGGGGCAAAATAGCATGGAATCAGAGAAGCCC 30840
Query 108093 TCTGAGTCCaaaaaaaaTCGCTGGAAATACCGCTATGAGGTGACAGACACACTGTACCCT 108152
|| | | ||| | |||||| |||||| |||| ||| || | | ||
Sbjct 30839 TCAGCATACAAGCAGGGGCGCTGGCAATACCATCATGAAGTGGGGGAGTTCATCTTCCGG 30780
Query 108153 ACCAGCAAGATGAAGGACCCTCCCCCTGATAATTTACCCATGTTCACAGGGAATGCCTAT 108212
|| || | ||| | ||||| ||| || | ||||||||||| || ||||| ||
Sbjct 30779 ACAGCCACGCAGAAACAGCCTCCGCCTCTCAACTCTCCCATGTTCACGGGCAATGCATAC 30720
Query 108213 TTTGTGGCCTCTCGAGCCTTTGTCCAACATGTCTTAGACAACCCTAAATCCCAAAGACTG 108272
| |||| | | || |||||||| || || |||| | |||| | | || | |
Sbjct 30719 ATCGTGGTCACACGGGCCTTTGTGCAGCACATCTTCAAGGACCCCACGGCACAGCGGTTC 30660
Query 108273 GTTGAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCGT 108332
|||| |||| ||| |||||||| ||||| ||||| ||| | ||||||||||| | ||
Sbjct 30659 CTTGAGTGGGCCAAGGACACCTACAGCCCTGACGAGCACGTATGGGCCACCCTCAACCGC 30600
Query 108333 GCTCCGTGGATGCCTGGCTCTGTTCCTAGCCACCCCAAGTATCACATCTCAGACATGACT 108392
|| | |||| || | | || | |||||| || |||| |||||||
Sbjct 30599 ATGCCTGGCGTGCCGGGTGCCATACCCCAGAATGACAAGTACCAGCTCTCGGACATGAAC 30540
Query 108393 GCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGCGCCT 108452
||| | || | | |||||||||||||||| ||||| || ||||| ||| |||||
Sbjct 30539 GCCCTTCCCCGCATGGTCAAGTGGCAGTACCTGGAGGGCGACACCAGCAAGGGTGCGCCC 30480
Query 108453 TATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGACCTG 108512
|| | |||||| | || | || | | | ||| ||||||| |||||| | || ||| |
Sbjct 30479 TACCCGCCCTGCACCGGCAAGCACCAGCGCGCCGTCTGCATCTACGGGACGGGAGACGTC 30420
Query 108513 TACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGACCCGAGGGTGGATGAT 108572
|||| | |||||| | || |||||| |||| |||||||| ||||| |||||| |||
Sbjct 30419 CCCTGGCTGCTCCAGCAGCACCACCTCCTGGCCAACAAGTTCGACCCCTTGGTGGACGAT 30360
Query 108573 AACGTCCTGCAGTGCTTAGAAGAGTACCTACGTCATAAGGCCATCTATGG 108622
|| | | | ||| | || ||| |||| || || | |||| |||| ||
Sbjct 30359 GCCGCCATCCTGTGTCTCGAGGAGCACCTGCGCCACAGGGCCCTCTACGG 30310
>seq42931
Length=3913
Score = 91.5 bits (100), Expect = 1e-13
Identities = 216/323 (67%), Gaps = 4/323 (1%)
Strand=Plus/Plus
Query 107708 AGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAGATTGAAAACTTTGAACGGCT 107767
||| || || ||||| ||||| || ||||| || | || || || | |||| | ||
Sbjct 379 AGAATTTCCAATTGCTTACTCAATAGTGGTTTATCACAAAATAGAGATGCTTGATAGACT 438
Query 107768 GCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTCCACGTGGATGTGAAGTCCCC 107827
||| || | | ||||||||||||||| | |||||| | || || || ||||| ||
Sbjct 439 TCTGAGATCAATCTATGCCCCTCAGAACTTCTACTGTATTCATGTTGACAAAAAGTCTCC 498
Query 107828 AGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGCTTCCCCAATGTCTTCATGGC 107887
||| |||| || || |||| || | || || || |||||||| || |
Sbjct 499 AGAATCTTTTTTTTCTGCTGTGAAGGGAATAGTCTCATGTTTTGATAATGTCTTTATTTC 558
Query 107888 CAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGAGTGCAAGCTGACCTGAACTG 107947
||| |||| | || || ||||| || ||| ||| |||||||| ||| | |||||
Sbjct 559 CAGCCAGTTAGAGAGCGTTGTATATGCTTCATGGAGCAGGGTGCAAGCAGACATTAACTG 618
Query 107948 TATGGAAGACTTGCTCCAGAGCTCAGTGCCA--TGGAAGTACTTACTGAATACATGCGGG 108005
||| |||| | || |||| ||| | | ||||| ||| || | || || ||
Sbjct 619 CATGAAAGA-TCTCTACAGA-AGAAGTTCAAACTGGAAATACCTAATTAACCTCTGTGGC 676
Query 108006 ACAGACTTCCCCATAAAGACCAA 108028
| ||||| || |||||||||||
Sbjct 677 ATGGACTTTCCTATAAAGACCAA 699
Score = 89.7 bits (98), Expect = 4e-13
Identities = 195/288 (68%), Gaps = 8/288 (3%)
Strand=Plus/Plus
Query 108274 TTGAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCGTG 108333
|||| |||| |||||||| || ||||| || || |||| ||||| || | ||| |
Sbjct 948 TTGAGTGGGCAAAAGACACTTACAGCCCAGATGAGTACCTGTGGGCAACAATACAGAGAA 1007
Query 108334 CTCCGTGGA-TGCCTGGCTCTGTTCC---TAGCCACCCCAAGTATCACATCTCAGACATG 108389
||| || | | || || | ||| | ||| || ||||| || | || ||||||
Sbjct 1008 -TCCCTGAAGTCCCAGGTGCAGTTTCATCTAGTGAC---AAGTACGACGTTTCTGACATG 1063
Query 108390 ACTGCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGCG 108449
| ||| | |||||| | ||||||||||||||| || || ||||| || ||| ||
Sbjct 1064 AATGCACTGGCCAGGTTTGTCAAGTGGCAGTACTTTGAAGGTGATGTGTCCAAGGGTGCA 1123
Query 108450 CCTTATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGAC 108509
|| || |||| ||| ||| | || | | |||| ||| |||| || |||
Sbjct 1124 CCCTACCCACCATGCAGCGGAGTTCACATTCGCTCTGTCTGTGTTTTTGGGGTAGGAGAC 1183
Query 108510 CTGTACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGAC 108557
||| ||||||| | | ||||| ||| |||| || |||||||| |||
Sbjct 1184 CTGAACTGGATGTTACGAAACCACCACTTCTTTGCTAACAAGTTCGAC 1231
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 345006117754320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |