Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gallirallus_20okinawae_20[genbank_20GCA_5F002003005.1_202017-02-09] 768,680 sequences; 1,114,530,436 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq14356 378 5e-100 seq42931 91.5 1e-13 >seq14356 Length=31392 Score = 378 bits (418), Expect = 5e-100 Identities = 657/950 (69%), Gaps = 4/950 (0%) Strand=Plus/Minus Query 107675 GTTCAT-ACAGTTCCCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGG 107733 |||||| ||| ||||| |||||| | || || ||| |||||||| |||||||| |||| Sbjct 31257 GTTCATCACA-TTCCCGCTGAGTCAGGAGGAAGCAGAGTTCCCCATCGCCTACTCCATGG 31199 Query 107734 TGGTCCATGAGAAGATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGA 107793 | |||| || || ||||| | ||||| ||||| ||||| | ||||| |||| |||| Sbjct 31198 TCATCCACGACAAAATTGAGATGTTTGAGCGGCTCCTGCGGTCTCTGTATACCCCCCAGA 31139 Query 107794 ACATATACTGTGTCCACGTGGATGTGAAGTCCCCAGA-GACTTTCAAAGAGGCGGTCAAG 107852 || | ||||| ||||| | || |||||| ||| ||||| || ||||| || | Sbjct 31138 ACGTCTACTGCATCCACATCGACAACAAGTCCTCAGCTGACTTCCAG-GAGGCCGTGCGG 31080 Query 107853 GCCATTATTTCCTGCTTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTAT 107912 ||||| | ||||||||||||| ||||| |||| || ||| |||||| ||| Sbjct 31079 GCCATCGTAGCCTGCTTCCCCAACGTCTTTGTGGCTAGCCGCCTGGAAAAGGTGGTCTAT 31020 Query 107913 GCCTCCTGGTCCAGAGTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCA 107972 |||||||||||| | |||| |||||||| ||||| ||| | ||| || | |||||| | Sbjct 31019 GCCTCCTGGTCCCGGCTGCAGGCTGACCTCAACTGCATGCAGGACCTGTTGCAGAGCCCC 30960 Query 107973 GTGCCATGGAAGTACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCC 108032 | |||||| || | || || || || || || || |||||||| ||||||||||| Sbjct 30959 ATACCATGGCGCTATGTCCTCAACACCTGTGGCACTGATTTCCCCATCAAGACCAATGCT 30900 Query 108033 GAGATGGTCCTGGCCCTCAAGATGTTGAAGGGTAAGAACAGTATGGAGTCTGAGGTACCT 108092 ||||| |||| | | | ||| || || |||| | || || ||||| || ||| || Sbjct 30899 GAGATCGTCCGTGTCTTGAAGGTGCTGCAGGGGCAAAATAGCATGGAATCAGAGAAGCCC 30840 Query 108093 TCTGAGTCCaaaaaaaaTCGCTGGAAATACCGCTATGAGGTGACAGACACACTGTACCCT 108152 || | | ||| | |||||| |||||| |||| ||| || | | || Sbjct 30839 TCAGCATACAAGCAGGGGCGCTGGCAATACCATCATGAAGTGGGGGAGTTCATCTTCCGG 30780 Query 108153 ACCAGCAAGATGAAGGACCCTCCCCCTGATAATTTACCCATGTTCACAGGGAATGCCTAT 108212 || || | ||| | ||||| ||| || | ||||||||||| || ||||| || Sbjct 30779 ACAGCCACGCAGAAACAGCCTCCGCCTCTCAACTCTCCCATGTTCACGGGCAATGCATAC 30720 Query 108213 TTTGTGGCCTCTCGAGCCTTTGTCCAACATGTCTTAGACAACCCTAAATCCCAAAGACTG 108272 | |||| | | || |||||||| || || |||| | |||| | | || | | Sbjct 30719 ATCGTGGTCACACGGGCCTTTGTGCAGCACATCTTCAAGGACCCCACGGCACAGCGGTTC 30660 Query 108273 GTTGAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCGT 108332 |||| |||| ||| |||||||| ||||| ||||| ||| | ||||||||||| | || Sbjct 30659 CTTGAGTGGGCCAAGGACACCTACAGCCCTGACGAGCACGTATGGGCCACCCTCAACCGC 30600 Query 108333 GCTCCGTGGATGCCTGGCTCTGTTCCTAGCCACCCCAAGTATCACATCTCAGACATGACT 108392 || | |||| || | | || | |||||| || |||| ||||||| Sbjct 30599 ATGCCTGGCGTGCCGGGTGCCATACCCCAGAATGACAAGTACCAGCTCTCGGACATGAAC 30540 Query 108393 GCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGCGCCT 108452 ||| | || | | |||||||||||||||| ||||| || ||||| ||| ||||| Sbjct 30539 GCCCTTCCCCGCATGGTCAAGTGGCAGTACCTGGAGGGCGACACCAGCAAGGGTGCGCCC 30480 Query 108453 TATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGACCTG 108512 || | |||||| | || | || | | | ||| ||||||| |||||| | || ||| | Sbjct 30479 TACCCGCCCTGCACCGGCAAGCACCAGCGCGCCGTCTGCATCTACGGGACGGGAGACGTC 30420 Query 108513 TACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGACCCGAGGGTGGATGAT 108572 |||| | |||||| | || |||||| |||| |||||||| ||||| |||||| ||| Sbjct 30419 CCCTGGCTGCTCCAGCAGCACCACCTCCTGGCCAACAAGTTCGACCCCTTGGTGGACGAT 30360 Query 108573 AACGTCCTGCAGTGCTTAGAAGAGTACCTACGTCATAAGGCCATCTATGG 108622 || | | | ||| | || ||| |||| || || | |||| |||| || Sbjct 30359 GCCGCCATCCTGTGTCTCGAGGAGCACCTGCGCCACAGGGCCCTCTACGG 30310 >seq42931 Length=3913 Score = 91.5 bits (100), Expect = 1e-13 Identities = 216/323 (67%), Gaps = 4/323 (1%) Strand=Plus/Plus Query 107708 AGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAGATTGAAAACTTTGAACGGCT 107767 ||| || || ||||| ||||| || ||||| || | || || || | |||| | || Sbjct 379 AGAATTTCCAATTGCTTACTCAATAGTGGTTTATCACAAAATAGAGATGCTTGATAGACT 438 Query 107768 GCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTCCACGTGGATGTGAAGTCCCC 107827 ||| || | | ||||||||||||||| | |||||| | || || || ||||| || Sbjct 439 TCTGAGATCAATCTATGCCCCTCAGAACTTCTACTGTATTCATGTTGACAAAAAGTCTCC 498 Query 107828 AGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGCTTCCCCAATGTCTTCATGGC 107887 ||| |||| || || |||| || | || || || |||||||| || | Sbjct 499 AGAATCTTTTTTTTCTGCTGTGAAGGGAATAGTCTCATGTTTTGATAATGTCTTTATTTC 558 Query 107888 CAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGAGTGCAAGCTGACCTGAACTG 107947 ||| |||| | || || ||||| || ||| ||| |||||||| ||| | ||||| Sbjct 559 CAGCCAGTTAGAGAGCGTTGTATATGCTTCATGGAGCAGGGTGCAAGCAGACATTAACTG 618 Query 107948 TATGGAAGACTTGCTCCAGAGCTCAGTGCCA--TGGAAGTACTTACTGAATACATGCGGG 108005 ||| |||| | || |||| ||| | | ||||| ||| || | || || || Sbjct 619 CATGAAAGA-TCTCTACAGA-AGAAGTTCAAACTGGAAATACCTAATTAACCTCTGTGGC 676 Query 108006 ACAGACTTCCCCATAAAGACCAA 108028 | ||||| || ||||||||||| Sbjct 677 ATGGACTTTCCTATAAAGACCAA 699 Score = 89.7 bits (98), Expect = 4e-13 Identities = 195/288 (68%), Gaps = 8/288 (3%) Strand=Plus/Plus Query 108274 TTGAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCGTG 108333 |||| |||| |||||||| || ||||| || || |||| ||||| || | ||| | Sbjct 948 TTGAGTGGGCAAAAGACACTTACAGCCCAGATGAGTACCTGTGGGCAACAATACAGAGAA 1007 Query 108334 CTCCGTGGA-TGCCTGGCTCTGTTCC---TAGCCACCCCAAGTATCACATCTCAGACATG 108389 ||| || | | || || | ||| | ||| || ||||| || | || |||||| Sbjct 1008 -TCCCTGAAGTCCCAGGTGCAGTTTCATCTAGTGAC---AAGTACGACGTTTCTGACATG 1063 Query 108390 ACTGCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGCG 108449 | ||| | |||||| | ||||||||||||||| || || ||||| || ||| || Sbjct 1064 AATGCACTGGCCAGGTTTGTCAAGTGGCAGTACTTTGAAGGTGATGTGTCCAAGGGTGCA 1123 Query 108450 CCTTATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGAC 108509 || || |||| ||| ||| | || | | |||| ||| |||| || ||| Sbjct 1124 CCCTACCCACCATGCAGCGGAGTTCACATTCGCTCTGTCTGTGTTTTTGGGGTAGGAGAC 1183 Query 108510 CTGTACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGAC 108557 ||| ||||||| | | ||||| ||| |||| || |||||||| ||| Sbjct 1184 CTGAACTGGATGTTACGAAACCACCACTTCTTTGCTAACAAGTTCGAC 1231 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 345006117754320