Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gallirallus_20okinawae_20[genbank_20GCA_5F002003005.1_202017-02-09] 768,680 sequences; 1,114,530,436 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq470410 125 6e-24 seq102374 84.2 2e-11 >seq470410 Length=401 Score = 125 bits (138), Expect = 6e-24 Identities = 117/149 (79%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 23048 ACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTG 23107 ||||| |||||| |||||||| || || || || || |||||||| || || || ||| Sbjct 266 ACCTCATCTTTGCTGGTGTACTCCACTATCTCTGTGCACAGATTGCTGCATTTGATGGTG 207 Query 23108 CCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTG 23167 ||||| || ||| ||||| || | ||||| || || |||||||||||||| |||||| Sbjct 206 CCCAAGTTCTGCTGATTGCTCTTCCTGTTGCAGGAGTCTTTGTAGAGCATGTAGGGCGTG 147 Query 23168 CCCGTCTCGACCTGCGACTCGATGATCGC 23196 || |||||| ||| ||||||||||| || Sbjct 146 CCGGTCTCGGTCTGGGACTCGATGATGGC 118 >seq102374 Length=14565 Score = 84.2 bits (92), Expect = 2e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 57969 GAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCA 58028 |||||| | | || || || || || ||||| || ||||||||||| |||||| || Sbjct 3526 GAGAGGGTGGTTGCCTTTGCTGCAGTTGAAGGCATCTTCTTTTCGGGTTCCTTTGCTGCT 3467 Query 58029 ATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTT 58072 ||||||||| ||||||| | ||||||||||| || ||||| || Sbjct 3466 ATATTTTGGCTGAAGAAGAGAGGCCTGATGCCTGGACTGACCTT 3423 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 441483253545600