Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gallirallus_20okinawae_20[genbank_20GCA_5F002003005.1_202017-02-09] 768,680 sequences; 1,114,530,436 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq102374 120 4e-22 seq92776 114 2e-20 seq122248 87.8 2e-12 seq59652 87.8 2e-12 seq293044 86.0 8e-12 seq30292 84.2 3e-11 >seq102374 Length=14565 Score = 120 bits (132), Expect = 4e-22 Identities = 108/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 |||| ||||| ||||| | ||| || || || || ||||| ||||| ||||| | ||| | Sbjct 3394 CCTCATCTCTGCTAATAAGTTCATTGGAGAAGGTCAGTCCAGGCATCAGGCCTCTCTTCT 3453 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | ||||||||||| | ||| || || || ||||||||||| ||||| ||||||||||||| Sbjct 3454 TCAGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAGG 3513 Query 33724 CAATAAGTCTCTCTCC 33739 ||| | ||||| || Sbjct 3514 CAACCACCCTCTCACC 3529 >seq92776 Length=9696 Score = 114 bits (126), Expect = 2e-20 Identities = 98/121 (81%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 |||| |||||||| || | |||||||||||| |||||||| ||||||| || | || | Sbjct 4524 CCTCATCTCTACTGATGAGTTCGTTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCT 4465 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | |||||||| || || || || || || ||||||||||||||||| ||||| ||||| | Sbjct 4464 TCAGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAAAAG 4405 Query 33724 C 33724 | Sbjct 4404 C 4404 >seq122248 Length=2130 Score = 87.8 bits (96), Expect = 2e-12 Identities = 93/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 188485 TGTTGTTACTTTCTATGATGCGCGTATCGTTATACAAGCTTTCATGTTGACTACTGCAGT 188544 ||| || | ||||||||||||| | |||| | ||||| || || | |||||||| || Sbjct 1747 TGTAGTAAGTTTCTATGATGCGTCTGTCGTCTTGCAAGCCTTTATTCTTACTACTGCTGT 1688 Query 188545 GTTTCTTGCTCTGACTACATGTACTCTACAATCAAAGAGAGATTTCAGTAAACTTGTAAC 188604 ||||| | |||||| ||| ||| | || ||||||||||| ||||| ||| ||| | | Sbjct 1687 ATTTCTGGGACTGACTGCATATACCTTGCAGTCAAAGAGAGACTTCAGCAAATTTGGAGC 1628 Query 188605 AGG 188607 ||| Sbjct 1627 AGG 1625 >seq59652 Length=1942 Score = 87.8 bits (96), Expect = 2e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 62387 TACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCAC 62446 ||| ||||| ||||| || | ||||| || ||||| || || ||||| || || || | Sbjct 1180 TACCTGGAACTCTCCGGAGAGGACTCTGCGCGTGTAGATGTTGCTGGTGTAGGGCTCGAT 1239 Query 62447 CGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGG 62494 ||||| ||||| ||||| || |||||||| || ||||||||||| || Sbjct 1240 GGACTCGTTATTGCCCAAGATCTGAGCAGTGGAAGCAGTCGGCATGGG 1287 >seq293044 Length=654 Score = 86.0 bits (94), Expect = 8e-12 Identities = 122/172 (71%), Gaps = 0/172 (0%) Strand=Plus/Plus Query 62626 CATATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAATGCACCGT 62685 |||| || ||||| || |||| || || || |||| ||| || || || || ||||||| Sbjct 368 CATAGGTTTCATAGGGCCCTTGCTCCTTGGCAAGTTCACAGCTGGCTTCCAAGGCACCGT 427 Query 62686 AATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAATGGAT 62745 |||||||||| |||||||||| || || || | || || || || || ||||| || Sbjct 428 AATAAATGGTCTCAAAGATCTGCTGGTTCAGGTGCTGGGCCTCAGGACTCTCAAAGGGGA 487 Query 62746 AATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGG 62797 | | | || || || || || || | || || || || || ||||| || Sbjct 488 ACCTCATAAGGATGAAAGCATCTGCCAGGCCCTGCACGCCGATGCCGATGGG 539 >seq30292 Length=3159 Score = 84.2 bits (92), Expect = 3e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 63267 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGT 63326 ||||| ||||| ||||||||||||||||| || || | || || ||||| | || || Sbjct 1110 ACTCGCTTCATGAAGAGATCAGGAATCCAGAGGGCAAAGAAAAGGTCTCTGGCTCGCTGC 1169 Query 63327 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 63386 || || || || || ||||| || || || || ||| | | || || | ||||| || Sbjct 1170 TCTTCTTTCCCAGTGTTCTTCTTCAGGTCAAGAAACTCAAAGATGTCCAAGTGCCAGGGC 1229 Query 63387 TCCAAGTATATGGCCATAACTCCAGG 63412 |||| ||| ||||| | | | ||||| Sbjct 1230 TCCAGGTAGATGGCAAAAGCCCCAGG 1255 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 623765997590400