Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gallirallus_20okinawae_20[genbank_20GCA_5F002003005.1_202017-02-09] 768,680 sequences; 1,114,530,436 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq144307 168 2e-36 seq102374 116 8e-21 seq396561 107 4e-18 seq92776 107 4e-18 >seq144307 Length=5085 Score = 168 bits (186), Expect = 2e-36 Identities = 135/163 (83%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 78488 GCATTATGGTGGTATTATATCTCTAAAGGAATAGAATACCTAGATACTATCTTCTTCATC 78547 || ||||||||||||||| ||||||||||||| ||||| | ||||| | ||||||||| Sbjct 1917 GCTTTATGGTGGTATTATGTCTCTAAAGGAATTGAATATTTGGATACAGTATTCTTCATC 1858 Query 78548 CTACGAAAGAAATTTAATCAAATTAGTTTTCTACATGTATATCATCATTTTACTATGTTT 78607 || | ||||||||||| ||||||||||| || ||||| ||||| ||||| || ||||| Sbjct 1857 CTGAGGAAGAAATTTAACCAAATTAGTTTCCTTCATGTCTATCACCATTTCACCATGTTC 1798 Query 78608 ACTTTGGGATGGATAGGTATTAAATGGTTCGCAGGAGGACAAG 78650 || ||| | ||||| |||||||| ||| | ||||| ||||||| Sbjct 1797 ACCTTGTGGTGGATTGGTATTAAGTGGGTTGCAGGTGGACAAG 1755 >seq102374 Length=14565 Score = 116 bits (128), Expect = 8e-21 Identities = 106/134 (79%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 269126 GGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCC 269185 || || ||| | ||||| ||||| || || ||||| || ||||||||||| || ||||| Sbjct 3529 GGTGAGAGGGTGGTTGCCTTTGCTGCAGTTGAAGGCATCTTCTTTTCGGGTTCCTTTGCT 3470 Query 269186 GCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTG 269245 ||||| |||||| ||||||| |||||||| ||||| ||| | || ||||| || ||| | Sbjct 3469 GCTATATTTTGGCTGAAGAAGAGAGGCCTGATGCCTGGACTGACCTTCTCCAATGAACTT 3410 Query 269246 ATAAGCAGGGACGA 269259 || ||||| || || Sbjct 3409 ATTAGCAGAGATGA 3396 >seq396561 Length=139 Score = 107 bits (118), Expect = 4e-18 Identities = 107/139 (77%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 104375 TGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGC 104434 || || || |||||||| || || | || ||||| || || || |||||||| || ||| Sbjct 1 TGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCCAGCTGCTTCCCAGCAAAGATCAGC 60 Query 104435 CTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACG 104494 ||||| ||||||||||| || ||||| || ||||| ||||| || || ||||| || | | Sbjct 61 CTCTGCTGATCAGGAGGAATACCTTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATG 120 Query 104495 GTATCGCTAGGTTCTACCT 104513 || || || || || |||| Sbjct 121 GTGTCACTGGGCTCAACCT 139 >seq92776 Length=9696 Score = 107 bits (118), Expect = 4e-18 Identities = 98/124 (79%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 269136 TAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTT 269195 |||| |||||||| || || ||||| || |||||||| || |||||||| | || |||| Sbjct 4399 TAGTGGCTTTTGCAGCAGTGGAAGGAATCTTCTTTTCTGGCTCTTTTGCATCAATTTTTT 4458 Query 269196 GGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGG 269255 || ||||||||||||| | ||||| ||| | ||||| ||||||||| | || || || | Sbjct 4459 GGCTGAAGAAAAGAGGATTAATGCCTGGACTCACTTTTTCTAACGAACTCATCAGTAGAG 4518 Query 269256 ACGA 269259 | || Sbjct 4519 ATGA 4522 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1140058608185440