Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gallirallus_20okinawae_20[genbank_20GCA_5F002003005.1_202017-02-09] 768,680 sequences; 1,114,530,436 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq64391 159 5e-34 seq12279 116 5e-21 >seq64391 Length=6152 Score = 159 bits (176), Expect = 5e-34 Identities = 227/318 (71%), Gaps = 1/318 (0%) Strand=Plus/Plus Query 8679 GGAACGCGGCCAACGGACACCCTTTGACGTTGCTACAGACTAGAGACTGGATAGTTGCAC 8738 ||||||| | || ||||| ||||| || ||| | |||| || ||| | | || Sbjct 230 GGAACGCAGTGAAAGGACAGCCTTTCACATTGTTGCAGATGAGCTTCTGTAAGGAGGCGG 289 Query 8739 TCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGG 8798 | || | ||| |||| ||||| | ||| || |||||||| || |||||||| | |||| Sbjct 290 TATTAATGATTTCAAAGCCCACTTTTCCACCAAAGGTGCTAGGCTTCCAGTACTCAGGGG 349 Query 8799 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGC 8858 ||||||| | || |||| || || || ||||| |||||||| || | ||| | ||| Sbjct 350 AGCAGATTGCATTTCCCATCAGTCCCTTCAGGGAGAACGGAGCTCCAATCTCCACCATGG 409 Query 8859 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCA 8918 | ||||| |||||||| || || ||||| || || | || || | |||||||||| Sbjct 410 TTTCACCAAAGATGGCACCTGGTCGTGGCTTCTCTACGAGGAGGCCTGGATACAACTCCA 469 Query 8919 CAGCCTCGATGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTGT-T 8977 ||| || |||||||| ||||| | ||||| || || ||||| ||||||||||| Sbjct 470 TAGCATCAATGTCTCCATAAAGTTCTTCCAGTTCAGCTGCCATTTCTTTTTCTCCTGTAA 529 Query 8978 TTATTAATaaaaataaaa 8995 || || || | || |||| Sbjct 530 TTGTTGATGAGAAAAAAA 547 Score = 120 bits (132), Expect = 4e-22 Identities = 179/254 (70%), Gaps = 0/254 (0%) Strand=Plus/Plus Query 9610 TCCCCGATAATGATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGT 9669 || || || | |||||| | ||| || || ||||| || || ||| ||| || ||||| Sbjct 2182 TCACCAATCAGGATGAGCCTAGTTGTTTGGAACAGCTGCTCATCATCCCACTCCGGATGC 2241 Query 9670 TCTCGTTTCAGAACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATC 9729 || ||||||| | || || || | |||||||||||| ||||| || ||||| |||||| Sbjct 2242 TCCTGTTTCAGGATGTCACAGACGCGGTTGTGTTCCCTCAGCCATATTGTAGCATACATC 2301 Query 9730 ATGAGACCAGGCACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGGC 9789 || | || || |||| ||||| |||| || || |||| | ||| | || || Sbjct 2302 ATCAAGCCTGGGACCAAACCAAACACCTCCTGCCCCACAGAGAACTGCAAGTGCTCAGGT 2361 Query 9790 ACTTCGGGAGGATAGATCATGTGCACCTGGACATCTTTGACCGAGGGGGGATACATTTCA 9849 || | ||| || |||||||| | |||| || || || | || |||||||| || Sbjct 2362 ACGTGGGGCGGGTAGATCATCTCTGCCTGAGTGTCCTTCACTGTTGGTGGATACATCTCT 2421 Query 9850 CCGTCAATAATCTG 9863 || ||||| ||||| Sbjct 2422 CCATCAATCATCTG 2435 >seq12279 Length=17677 Score = 116 bits (128), Expect = 5e-21 Identities = 147/202 (73%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 8739 TCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGG 8798 |||| || ||| |||| || |||| || || || |||||||||||||| | || | Sbjct 12348 TCTTAACTATCTCAAAGCCAGTTGCTCCACCAAATGTACTGGGTTTCCAGTACTCTGGAG 12407 Query 8799 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGC 8858 |||||||| ||| | | || || || |||||||||||||| || | ||| | |||| Sbjct 12408 AGCAGATGGGGTTTCCAAGAAGCCCCTTCAGGGAAAACGGAGCTCCAATCTCCACCATGC 12467 Query 8859 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCA 8918 | || || || || | ||||| |||| || || | || || |||| ||| ||||||| Sbjct 12468 TTTCTCCAAAAATACCATTGGGTTGGGGTTTCTCAAGCAGCAAGCCGGGGTAAAACTCCA 12527 Query 8919 CAGCCTCGATGTCTCCGTAAAG 8940 ||| || ||||||||||| || Sbjct 12528 GAGCATCAATGTCTCCGTACAG 12549 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 701716939459200