Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gallirallus_20okinawae_20[genbank_20GCA_5F002003005.1_202017-02-09] 768,680 sequences; 1,114,530,436 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq406070 98.7 7e-16 seq98332 87.8 1e-12 >seq406070 Length=112 Score = 98.7 bits (108), Expect = 7e-16 Identities = 71/82 (87%), Gaps = 5/82 (6%) Strand=Plus/Plus Query 25915 TGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGTTAATCCTTTCATG 25969 |||||||||||||||| || ||||| ||||| || ||||||||| |||| |||||| Sbjct 1 TGGCTGTGGTTTCGCTGGAGAGTAGGTAGGGACAGTGGGAATCTCGTTCATCCATTCATG 60 Query 25970 CGCGTCACTAATTAGATGACGA 25991 |||||||||||||||||||||| Sbjct 61 CGCGTCACTAATTAGATGACGA 82 >seq98332 Length=2305 Score = 87.8 bits (96), Expect = 1e-12 Identities = 74/91 (81%), Gaps = 5/91 (5%) Strand=Plus/Minus Query 25905 CCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGTTAA 25959 ||| |||||||||||||||||||||| | ||||| ||||| || ||||| ||| | Sbjct 120 CCCATTCCCTTGGCTGTGGTTTCGCTGCAGAGTAGGTAGGGACAGTGGGAATCTTGTTCA 61 Query 25960 TCCTTTCATGCGCGTCACTAATTAGATGACG 25990 ||| |||||| || ||||||||||| ||||| Sbjct 60 TCCATTCATGTGCATCACTAATTAGGTGACG 30 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 331809318333080