Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gallirallus_20okinawae_20[genbank_20GCA_5F002003005.1_202017-02-09] 768,680 sequences; 1,114,530,436 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq213918 95.1 2e-14 seq62384 84.2 4e-11 >seq213918 Length=1721 Score = 95.1 bits (104), Expect = 2e-14 Identities = 65/72 (90%), Gaps = 1/72 (1%) Strand=Plus/Minus Query 142053 GTCTCTGTGGCGCAATGGAC-AGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCGAC 142111 |||||||||||||||||||| |||||| ||||||||||||||| ||||| ||||||||| Sbjct 605 GTCTCTGTGGCGCAATGGACGAGCGCGCTGGACTTCTAATCCAGAGGTTCCGGGTTCGAG 546 Query 142112 CCCCGCCAGAGA 142123 |||| |||||| Sbjct 545 TCCCGGCAGAGA 534 >seq62384 Length=4562 Score = 84.2 bits (92), Expect = 4e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 294919 GTCTGCTTCTGCAGGTTGGAAATAGCAATCCGAGCTGCCAGGATGCCGTAGTCGGGGTTC 294978 |||| ||| ||||||||||| | ||| |||| |||||||||||| ||||||| |||| | Sbjct 3799 GTCTCCTTGTGCAGGTTGGAGACAGCGATCCTGGCTGCCAGGATGGCGTAGTCAGGGTGC 3858 Query 294979 AGGGTGGTGAGCGAAGCAGCCTTGTCGGCAGTGAGGTCATCGAGCTGGACTGTGGT 295034 |||||| || | || ||| | ||||||| || ||| |||| ||||| || Sbjct 3859 TTGGTGGTCAGGGTGGCGGCCGTTTCGGCAGCCAGTGTATCCAGCTCCACTGTCGT 3914 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1017713930859880