Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gallirallus_20okinawae_20[genbank_20GCA_5F002003005.1_202017-02-09] 768,680 sequences; 1,114,530,436 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq396561 95.1 2e-14 seq644773 93.3 8e-14 seq92776 84.2 4e-11 >seq396561 Length=139 Score = 95.1 bits (104), Expect = 2e-14 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 68277 TGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGT 68336 |||||||| || || || || || | |||||||| | ||||||||| || || || || Sbjct 1 TGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCCAGCTGCTTCCCAGCAAAGATCAGC 60 Query 68337 CTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATG 68396 || || || || || ||||| ||||||||||| || ||||| ||||| || ||| ||| Sbjct 61 CTCTGCTGATCAGGAGGAATACCTTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATG 120 Query 68397 GTGTC 68401 ||||| Sbjct 121 GTGTC 125 >seq644773 Length=189 Score = 93.3 bits (102), Expect = 8e-14 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 68358 CCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCC 68417 ||||| || || || ||||| ||||||||| |||||||||||| | || || ||| Sbjct 5 CCTTCTTTATCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCATTGGGCTCCACCTCC 64 Query 68418 AAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 | |||||||||||| ||||| || ||||| ||||| |||||||| Sbjct 65 AGGGTGATGGTTTTGCCCGTCAGCGTCTTCACGAAGATCTGCAT 108 >seq92776 Length=9696 Score = 84.2 bits (92), Expect = 4e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 10740 ACCTCCTCCACGGTCCAGAAAGTGGCAACGGCCTTCTTGTACATCTGGAAAATGTCGGGG 10799 ||||||||| | |||||||| | || ||||||||||||||||||| |||||||| || Sbjct 1514 ACCTCCTCCGCCGTCCAGAAGGAAGCCTCGGCCTTCTTGTACATCTGCCAAATGTCGTGG 1455 Query 10800 TACCGGATGGGGAA 10813 ||| |||||||||| Sbjct 1454 TACTGGATGGGGAA 1441 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 912766991169600