Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gallirallus_20okinawae_20[genbank_20GCA_5F002003005.1_202017-02-09] 768,680 sequences; 1,114,530,436 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq470410 127 4e-24 seq293044 109 1e-18 seq30292 109 1e-18 seq59652 104 4e-17 seq102374 100 5e-16 >seq470410 Length=401 Score = 127 bits (140), Expect = 4e-24 Identities = 152/204 (75%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 244706 ACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTG 244765 ||||| || | ||||||||| || ||||| ||||| || || ||||| ||||||||| Sbjct 266 ACCTCATCTTTGCTGGTGTACTCCACTATCTCTGTGCACAGATTGCTGCATTTGATGGTG 207 Query 244766 CCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCC 244825 |||| || ||| |||||| ||| |||||||| ||| |||||||||||| ||||| Sbjct 206 CCCAAGTTCTGCTGATTGCTCTTCCTGTTGCAGGAGTCTTTGTAGAGCATGTAGGGCGTG 147 Query 244826 CCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGTCCCTAGCCTTGACCGTCCTG 244885 ||||||||| ||||| ||| || | || |||||| | | ||||| ||| |||| Sbjct 146 CCGGTCTCGGTCTGGGACTCGATGATGGCGTACCAGAGCTGCTGGGCCTTCACCACCCTG 87 Query 244886 CGAGCCTTGCCCT-CTGCCTCGTA 244908 || | ||||| ||| |||||| Sbjct 86 CGCACGCGGCCCTGCTG-CTCGTA 64 >seq293044 Length=654 Score = 109 bits (120), Expect = 1e-18 Identities = 156/220 (71%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 244318 CAGCCCCTTGCTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAG 244377 || ||| |||||||| || ||||| ||||| ||||| || | || ||| || Sbjct 342 CACCCCTTTGCTGACAGGAGAACCCTCATAGGTTTCATAGGGCCCTTGCTCCTTGGCAAG 401 Query 244378 CTTACAGCTCTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTC 244437 | |||||| | || | ||| |||| || |||||||| |||||| || ||||| || Sbjct 402 TTCACAGCTGGCTTCCAAGGCACCGTAATAAATGGTCTCAAAGATCTGCTGGTTCAGGTG 461 Query 244438 GCGGGCCTTGCCGCAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTG 244497 |||||| | ||||||| | ||| | ||||| | || ||||| ||||| Sbjct 462 CTGGGCCTCAGGACTCTCAAAGGGGAACCTCATAAGGATGAAAGCATCTGCCAGGCCCTG 521 Query 244498 CACGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGAGCGC 244537 |||||||||||||||||| | ||| ||| ||||||||||| Sbjct 522 CACGCCGATGCCGATGGGACGGTGGCGCCTGTTGGAGCGC 561 >seq30292 Length=3159 Score = 109 bits (120), Expect = 1e-18 Identities = 99/125 (79%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 245008 CTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTC 245067 || ||||||||| || || ||||||||||| ||| ||||| |||| | |||||| || Sbjct 1115 CTTCATGAAGAGATCAGGAATCCAGAGGGCAAAGAAAAGGTCTCTGGCTCGCTGCTCTTC 1174 Query 245068 CGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCAT 245127 |||||||||||| |||| || | ||| ||||||| ||| | |||||||||||||| Sbjct 1175 TTTCCCAGTGTTCTTCTTCAGGTCAAGAAACTCAAAGATGTCCAAGTGCCAGGGCTCCAG 1234 Query 245128 GTAGA 245132 ||||| Sbjct 1235 GTAGA 1239 >seq59652 Length=1942 Score = 104 bits (114), Expect = 4e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 244097 ACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCTCGATG 244156 ||||| |||||||| || || || | |||| ||||| ||||||| || ||||||||| Sbjct 1181 ACCTGGAACTCTCCGGAGAGGACTCTGCGCGTGTAGATGTTGCTGGTGTAGGGCTCGATG 1240 Query 244157 CTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACCAGCAGA 244216 ||| | ||||||| ||||| || ||| |||||||||||||| || | ||||| Sbjct 1241 GACTCGTTATTGCCCAAGATCTGAGCAGTGGAAGCAGTCGGCATGGGAGAGAGGAGCAGG 1300 Query 244217 CTGTTCCTCACGCCGTGCCT 244236 ||||| || || |||||||| Sbjct 1301 CTGTTTCTGACACCGTGCCT 1320 >seq102374 Length=14565 Score = 100 bits (110), Expect = 5e-16 Identities = 106/137 (77%), Gaps = 2/137 (1%) Strand=Plus/Minus Query 42696 GGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCC 42755 || |||||| |||| |||||| | || || || ||||||||||| ||||| |||| || Sbjct 3529 GGTGAGAGGGTGGTTGCCTTTGCTGCAGTTGAAGGCATCTTCTTTTCGGGTTCCTTTGCT 3470 Query 42756 TCCATCTTCTGGCTCAAGCAGA-AGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACT 42814 | || || ||||| ||| ||| ||| | |||||| ||||| |||||||| || ||||| Sbjct 3469 GCTATATTTTGGCTGAAGAAGAGAGGCCT-GATGCCTGGACTGACCTTCTCCAATGAACT 3411 Query 42815 CATCAGCAGGGACGAGG 42831 || ||||| || |||| Sbjct 3410 TATTAGCAGAGATGAGG 3394 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 935265516796800