Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gallirallus_20okinawae_20[genbank_20GCA_5F002003005.1_202017-02-09] 768,680 sequences; 1,114,530,436 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq64391 156 6e-33 seq12279 98.7 1e-15 >seq64391 Length=6152 Score = 156 bits (172), Expect = 6e-33 Identities = 212/296 (72%), Gaps = 0/296 (0%) Strand=Plus/Plus Query 8880 GGAACGCGGCCAACGGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGTTGCGG 8939 ||||||| | || ||||| || ||||||||| || ||||| ||| | || |||| Sbjct 230 GGAACGCAGTGAAAGGACAGCCTTTCACATTGTTGCAGATGAGCTTCTGTAAGGAGGCGG 289 Query 8940 TTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGG 8999 | || | ||| || || || || | || || |||||||| || ||||||||| | |||| Sbjct 290 TATTAATGATTTCAAAGCCCACTTTTCCACCAAAGGTGCTAGGCTTCCAGTACTCAGGGG 349 Query 9000 AGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGC 9059 ||||||| | || |||| || || |||| ||| |||||||| || | ||| | ||| Sbjct 350 AGCAGATTGCATTTCCCATCAGTCCCTTCAGGGAGAACGGAGCTCCAATCTCCACCATGG 409 Query 9060 TCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGA 9119 | ||||| ||||||||||| || || || || || |||| || ||| | || | || | Sbjct 410 TTTCACCAAAGATGGCACCTGGTCGTGGCTTCTCTACGAGGAGGCCTGGATACAACTCCA 469 Query 9120 CAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175 ||| || | ||| ||||| || |||||| || || || || || || || ||| Sbjct 470 TAGCATCAATGTCTCCATAAAGTTCTTCCAGTTCAGCTGCCATTTCTTTTTCTCCT 525 Score = 150 bits (166), Expect = 3e-31 Identities = 179/243 (74%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 9726 GATTAGACGAGTGGTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAG 9785 ||| || | ||| ||||| |||| |||||| ||| |||| ||||| || || ||||| || Sbjct 2193 GATGAGCCTAGTTGTTTGGAACAGCTGCTCATCATCCCACTCCGGATGCTCCTGTTTCAG 2252 Query 9786 AACATCGCAGACCCTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGG 9845 | || ||||| | ||||||||| ||||||||||| || || |||||||| || || || Sbjct 2253 GATGTCACAGACGCGGTTGTGTTCCCTCAGCCATATTGTAGCATACATCATCAAGCCTGG 2312 Query 9846 CACTAAACCAAACACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCACTTCGGGCGC 9905 || ||||||||||| || | |||||| | || ||| | || || || | ||||| Sbjct 2313 GACCAAACCAAACACCTCCTGCCCCACAGAGAACTGCAAGTGCTCAGGTACGTGGGGCGG 2372 Query 9906 ATACAGCATATGCACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACCGTCAATAAC 9965 || | ||| | |||| || || || || || || |||||||| || || ||||| | Sbjct 2373 GTAGATCATCTCTGCCTGAGTGTCCTTCACTGTTGGTGGATACATCTCTCCATCAATCAT 2432 Query 9966 CTG 9968 ||| Sbjct 2433 CTG 2435 >seq12279 Length=17677 Score = 98.7 bits (108), Expect = 1e-15 Identities = 188/277 (68%), Gaps = 0/277 (0%) Strand=Plus/Plus Query 8902 CTTCACATTGGCACAAATGAGGGACTGAATGGTTGCGGTTTTCACGATGTCTAAACCTAC 8961 |||||||||| || | ||| || || | ||| || || || || || || || Sbjct 12310 CTTCACATTGAGGCACACGAGCTTCTCAAGCGATGCTGTCTTAACTATCTCAAAGCCAGT 12369 Query 8962 GTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGAGCAGATGACGTTCGCCATGAG 9021 | || || || || ||||||||||||||| | || ||||||||| ||| | | || Sbjct 12370 TGCTCCACCAAATGTACTGGGTTTCCAGTACTCTGGAGAGCAGATGGGGTTTCCAAGAAG 12429 Query 9022 CCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCTCTCACCGAAGATGGCACCGGG 9081 ||| |||| |||||||||||| || | ||| | ||||| || || || || || ||| Sbjct 12430 CCCCTTCAGGGAAAACGGAGCTCCAATCTCCACCATGCTTTCTCCAAAAATACCATTGGG 12489 Query 9082 ACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGACAGCCTCGACGTCGCCATAGAG 9141 | ||||| || | | ||||| | ||| | || | ||| || | ||| || || || Sbjct 12490 TTGGGGTTTCTCAAGCAGCAAGCCGGGGTAAAACTCCAGAGCATCAATGTCTCCGTACAG 12549 Query 9142 GGCTTCCAACTCGGCAGCTATCTCCTTCTCACCTACA 9178 | |||| ||| || || |||| | ||| ||| || Sbjct 12550 CTCCTCCAGCTCTGCCGCCTTCTCTTCCTCTCCTGCA 12586 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716774059512000