Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gallirallus_20okinawae_20[genbank_20GCA_5F002003005.1_202017-02-09] 768,680 sequences; 1,114,530,436 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq4859 129 2e-24 seq146049 84.2 9e-11 >seq4859 Length=13494 Score = 129 bits (142), Expect = 2e-24 Identities = 283/419 (68%), Gaps = 9/419 (2%) Strand=Plus/Minus Query 451193 GGAAAGCCCTATATTCAAGTAAATTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAA 451252 || |||||| | | ||||| | || || ||||| | ||||| || || || ||| Sbjct 6255 GGCAAGCCCAAGGTGCAAGTGGAGTACAAGGGTGAGATGAAAACCTTCTTCCCAGAGGAA 6196 Query 451253 ATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCA 451312 || || ||||| ||||| |||||||| || | || || ||| |||| | | | Sbjct 6195 ATCAGCTCCATGGTCCTTACCAAAATGAAGGAGATTGCTGAGGCCTATCTTGGG-CGCAA 6137 Query 451313 GTTACTGA-TGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAAC 451371 | ||| || ||| || || ||||| || ||||| |||||||| | || || || || || Sbjct 6136 GGTACAGAATGCTGTCATCACTGTGCCTGCTTACTTCAATGACTCTCAGCGTCAGGCCAC 6077 Query 451372 TAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGC 451431 |||||||| || || |||| | ||||| | || ||||| || || || ||||| Sbjct 6076 CAAAGATGCTGGCACCATCACTGGCCTTAATGTGATGCGTATTATCAACGAGCCCACAGC 6017 Query 451432 AGCTGCTCTAGCATATGGACTAGGAAAATCAAAAGAAACAGA-----AGaaaaaaaTATT 451486 ||||||| |||| ||||| || ||| || ||| | | | || || || ||| | Sbjct 6016 AGCTGCTATAGCCTATGG-CTTGGATAA-GAAAGGTACCCGAGCTGGTGAGAAGAATGTG 5959 Query 451487 TTAGTATTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGG 451546 | | ||||| || || || || ||| |||| || | ||| | ||||| ||||| Sbjct 5958 CTCATCTTTGACTTGGGAGGGGGCACTTTTGATGTGTCCATCCTTACCATTGAGGATGGC 5899 Query 451547 GTATTTGAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGATAA 451605 | ||||| || ||| | || |||||| || ||||| || || || || |||| || Sbjct 5898 ATCTTTGAGGTGAAGTCCACAGCTGGTGACACCCATCTGGGTGGGGAGGACTTTGACAA 5840 >seq146049 Length=5037 Score = 84.2 bits (92), Expect = 9e-11 Identities = 126/176 (72%), Gaps = 6/176 (3%) Strand=Plus/Minus Query 451427 ACAGCAGCTGCTCTAGCATATGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATT 451486 ||||||||||| | ||||||||||| ||| ||| ||| | | ||| || ||||| Sbjct 3870 ACAGCAGCTGCCATCGCATATGGACT-GGA----CAAGAGAGA-GGGAGAGAAGAATATC 3817 Query 451487 TTAGTATTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGG 451546 | || ||||| || ||||| ||||| |||| || | || ||||||| |||| Sbjct 3816 CTGGTGTTTGACTTGGGTGGTGGAACCTTTGATGTCTCCCTGCTCACAATTGACAATGGA 3757 Query 451547 GTATTTGAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGA 451602 || |||||||| ||| || |||||||| || || || || || ||||| |||| Sbjct 3756 GTGTTTGAAGTTGTGGCCACTAATGGTGACACCCACCTGGGTGGAGAAGACTTTGA 3701 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1956260117497440