Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gallirallus_20okinawae_20[genbank_20GCA_5F002003005.1_202017-02-09] 768,680 sequences; 1,114,530,436 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq4859 307 1e-78 seq254718 178 2e-39 >seq4859 Length=13494 Score = 307 bits (340), Expect = 1e-78 Identities = 1040/1603 (65%), Gaps = 44/1603 (3%) Strand=Plus/Plus Query 6568 TTCATCTTCATCTTTATACTTTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTTCGA 6627 |||||| || |||| || || || || ||||| ||||| |||||||| || || | Sbjct 4954 TTCATCCTCTGCTTTGTATTTCTCTGCTTCTTGCACCATACGGTCAATGTCATCCTT-GC 5012 Query 6628 TAAT-CTCCCCTTATCATTCGTAATCGTAATCTTTTCGGATTTACCCGAGGCCTTATCTT 6686 ||| | ||||| || || || || || ||||| | ||||||| | ||| || Sbjct 5013 TAAGGCGACCCTTGTCGTTGGTGATGGTGATCTTGTTCTCCTTACCCGTGCTCTTGTCCA 5072 Query 6687 CAGCACTTACATTCAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTG 6746 | ||||| ||||||| |||||||| ||||| | || || | || | || || || Sbjct 5073 CGGCACTGACATTCAGGATACCATTGGCATCGATGTCAAAAGTGACCTCGATCTGGGGGA 5132 Query 6747 TACCCCTCGGTGCGGCTGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCG 6806 || | ||||| | || || ||||||| ||||| | ||||| || |||| ||| Sbjct 5133 CTCCACGGGGTGCTGGAGGGATGCCCGTTAGGTCAAACTTGCCAAGCAAGTTGTTGTCCT 5192 Query 6807 TCGCCTTCTTACGTTCACCTTCATAGACTTTAATTGTCACCGCAGGT-TGATTATCTTGT 6865 ||| | | | || || || || || | | || || | | || || || Sbjct 5193 TCGTCATAGCCCTCTCGCCCTCGTATACCTGGACCAGGAC-GCTGCTCTGGTTGTCCGAG 5251 Query 6866 GCCGTTGAGAAGATTTGTTCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGGG 6925 || | |||| | || || ||| | ||||| || ||||| | | || | | | Sbjct 5252 TAAGTGGTGAAGGTCTGAGTTTGCTTGGTGGGAATGGTGGTATTGCGCTTGATGAGAGCG 5311 Query 6926 GTCATAATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAAC 6985 ||||| | ||||| || |||| || || |||||||| || || ||||| || | | Sbjct 5312 GTCATCACTCCACCAGCTGTCTCGATGCCCAGGGACAGAGGGGTGACATCCAACAGCAGC 5371 Query 6986 AGGTCTTGAACAGATTCGTTCCCTTCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCG 7045 || || || ||| || | || ||| | | ||| || ||||| || | || ||| Sbjct 5372 AGATCCTGCACATTCTCAGACTTGTCTCCCATGAGGATAGCCGCTTGCACGGCAGCGCCG 5431 Query 7046 TATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCC 7105 || || || |||||||| ||||| || | || || || ||||| || || || | ||| Sbjct 5432 TAGGCAACAGCCTCATCAGGGTTGATGCTCTTGTTGAGCTCTTTGCCATTGAAGAAGTCC 5491 Query 7106 GATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTCATTC 7165 || || | ||| || || ||||| || || || ||||| |||| ||||| || | Sbjct 5492 TGTAGCAGCTTTTGGATCTTGGGGATACGGGTAGAGCCACCCACCAGCACGATCTCCTGG 5551 Query 7166 ACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTA 7225 | || || || | ||| | || || | | || || || || |||| | Sbjct 5552 ATTTGGCCCTTGTCTAGCTTGGCATCACGCAAGGCCTTCTCCACTGGCTCCAGGGTGCCA 5611 Query 7226 CGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCA 7285 ||||| | || | || ||||| || || ||||| |||||||| || ||||| ||| Sbjct 5612 CGGAAAAGATCAGCATTGAGCTCCTCGAAGCGGGCACGAGTAATGGAGGTGTAGAAGTCA 5671 Query 7286 ACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGA---TAACGTT 7342 | || ||| | | || ||||| |||||| | | ||||| | ||||| || || Sbjct 5672 ATACCCTCGAAGAGAGAGTCAATCTCAATGCTAGCTTGTG---TGGAAGAGCTTAGGGTG 5728 Query 7343 CGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATA 7402 |||||||| | |||||| || || || | || | | || ||| ||| || | |||| Sbjct 5729 CGCTTTGCCCTCTCACAAGCTGTACGCAGTCGCCTCACTGCTCGCTTGTTGCCAGCAATA 5788 Query 7403 TCTTTCTTATGTTTACGTTTAAACTCTTC-AGAGAAGTGTCGA--AGGAGTCTCGAATCG 7459 || ||| || ||||| || || ||||| | | || || | | | | | || Sbjct 5789 TCACGCTTGTGCTTACGCTTGAATTCTTCCACAAAATGGTTCACCATGCGGTTG---TCA 5845 Query 7460 AAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCT 7519 || || || ||||||| || || || || || || | || || |||||||| || | Sbjct 5846 AAGTCCTCCCCACCCAGATGGGTGTCACCAGCTGTGGACTTCACCTCAAAGATGCCATCC 5905 Query 7520 TCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTC 7579 |||||| | | | || |||||||| || || || |||| |||||| ||||| || ||| Sbjct 5906 TCAATGGTAAGGATGGACACATCAAAAGTGCCCCCTCCCAAGTCAAAGATGAGCACATTC 5965 Query 7580 GTATCGTCGTCTTTG------TTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGT 7633 | || | || | |||||||| | || || || ||||| || || || || Sbjct 5966 TTCTCACCAGCTCGGGTACCTTTCTTATCCAAGCCATAGGCTATAGCAGCTGCTGTGGGC 6025 Query 7634 TCATTAATAATACGAAG-ACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTG 7692 || || |||||||| | ||| || ||||||| || || | |||||||| || || || Sbjct 6026 TCGTTGATAATACGCATCACA-TTAAGGCCAGTGATGGTGCCAGCATCTTTGGTGGCCTG 6084 Query 7693 TCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACC 7752 || || || || || ||||| || || || || | ||| || | | || || || Sbjct 6085 ACGCTGAGAGTCATTGAAGTAAGCAGGCACAGTGATGACAGCATTCTGTACCTTGCGCCC 6144 Query 7753 GAGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGC 7812 ||||| | || || || || |||||||||||||| ||||| || || || || | Sbjct 6145 AAGATAGGCCTCAGCAATCTCCTTCATTTTGGTAAGGACCATGGAGCTGATTTCCTCTGG 6204 Query 7813 CGCAAACTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTT---ATCCGCA-G 7868 || |||| | ||||| || | || |||| | | |||| || | | || Sbjct 6205 GAAGAAGGTTTTCATCTCACCCTTGTACTCCACTTGCACCTTGGGCTTGCCACTCTCATT 6264 Query 7869 CAC--CGGGGATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGA 7926 ||| || ||| | | ||| | ||||| || ||| ||| |||| Sbjct 6265 CACCACGCGGA---------AGGGCCAGTGCTTCATGTCAGATTGCACCGTGGGGTCATC 6315 Query 7927 AAACTTTCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGT 7986 | |||| | ||||| |||||||| |||||||| | ||||| | |||||||| || Sbjct 6316 ATACTTGCGGCCGATGAGACGCTTGGCATCAAAGATGGTGTTGGTAGGGTTCATAGCCAC 6375 Query 7987 TTGGTTCTTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGA 8046 |||||||| || || |||||||| || || ||| || || || || || || || | Sbjct 6376 CTGGTTCTTGGCAGCATCCCCGATGAGGCGCTCAGTA---TCAGTGAAGGCCACATA-GC 6431 Query 8047 TGGG-GTCGTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGA 8105 |||| || || || || || ||||| || || || || || || | | | || ||| Sbjct 6432 TGGGCGTGGTGCGGTTGCCCTGGTCATTGGCGATGATCTCCACTTTGCCATGCTGGAAGA 6491 Query 8106 CGCCGACGCACGAATACGTTGTTCCTAAATCAATACCGATTGC 8148 | || ||||| || || || || || || || || ||||| || Sbjct 6492 CACCCACGCAGGAGTATGTGGTGCCCAAGTCGATGCCGATAGC 6534 >seq254718 Length=3011 Score = 178 bits (196), Expect = 2e-39 Identities = 367/543 (68%), Gaps = 6/543 (1%) Strand=Plus/Minus Query 7040 GCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAA 7099 || || || || || || ||||| ||||| || | || || || || || ||||| || Sbjct 2414 GCGCCATAAGCCACGGCTTCATCAGGGTTGATGCTCTTGTTGAGCTCCTTGCCGTTGAAG 2355 Query 7100 TAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATT 7159 ||||| | || || || || || ||||| || || || ||||| |||| ||||| Sbjct 2354 AAATCCTGCAGCAGTTTCTGGATCTTTGGGATACGAGTGGAGCCACCCACCAGCACGATG 2295 Query 7160 TCATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATA 7219 || | | | ||||| || | ||| | || || || | ||||| || || |||| Sbjct 2294 TCGTGGATCTGTGATTTGTCCAGCTTGGCATCCCGCAGGGCCTTTTCCACGGGATCCAGG 2235 Query 7220 CATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAG 7279 ||||||| ||| | ||| || ||||| || || | ||| ||||| || ||| Sbjct 2234 GTGCCGCGGAACAGGTCAGCATTCAGCTCTTCAAAGCGAGCTCTGGTGATGGACGTGTAG 2175 Query 7280 AAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAAC 7339 || |||| || || || | |||||||| ||||| | | || | | || || | Sbjct 2174 AAGTCAATACCCTCATAGAGAGAATCAATCTCAATACTGGCCTGCGTGCTGGAGGACAGG 2115 Query 7340 GTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAA 7399 || ||||| |||||||| || || || || | || |||| ||| ||| ||| || Sbjct 2114 GTGCGCTTGGCGCGCTCGCAGGCAGTGCGGAGGCGCCGAACGGCTCGCTTGTTCTCGCTG 2055 Query 7400 ATATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTG-TCGA--AGGAGTCTCGAA 7456 || || ||||| || || || || ||||| | |||||| | || | | | | Sbjct 2054 ATGTCCTTCTTGTGCTTGCGCTTGAACTCAGCGATGAAGTGGTTGACCATGCGGTTG--- 1998 Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 ||||| ||||| || |||||||| || || || || || | ||| || |||||||| || Sbjct 1997 TCGAAGTCTTCTCCGCCCAAGTGAGTGTCACCTGCTGTGGATTTCACCTCAAAGATGCCA 1938 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 ||||||| | | | || |||||||| || |||||||||||||| || || || ||| Sbjct 1937 TCTTCAATAGTGAGAATGGACACATCAAAGGTGCCACCACCCAGGTCGAAGATAAGAACG 1878 Query 7577 TTC 7579 ||| Sbjct 1877 TTC 1875 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629030126491200