Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gallirallus_20okinawae_20[genbank_20GCA_5F002003005.1_202017-02-09] 768,680 sequences; 1,114,530,436 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq4859 134 1e-25 seq254718 107 2e-17 seq391867 86.0 5e-11 >seq4859 Length=13494 Score = 134 bits (148), Expect = 1e-25 Identities = 364/552 (66%), Gaps = 14/552 (3%) Strand=Plus/Minus Query 549992 GCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAA 550051 ||||| || || || || || |||||||| || || ||||| | || |||| ||| Sbjct 6534 GCTATCGGCATCGACTTGGGCACCACATACTCCTGCGTGGGTGTCTTCCAGCATGGCAAA 6475 Query 550052 GTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACG 550111 || || || || |||||||| || || ||| | || || || ||||| | ||||| Sbjct 6474 GTGGAGATCATCGCCAATGACCAGGGCAACCGCACCACGCCCAGCTATGTGGCCTTCACT 6415 Query 550112 GAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAAT 550171 || ||||| | | | || ||||| || || | || | || || |||||||| Sbjct 6414 GATACTGAGCGCCTCATCGGGGATGCTGCCAAGAACCAGGTGGCTATGAACCCTACCAAC 6355 Query 550172 ACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCA 550231 || || |||||||| || ||| | || || | | | | |||| | || || || | Sbjct 6354 ACCATCTTTGATGCCAAGCGTCTCATCGGCCGCAAGTATGATGACCCCACGGTGCAATCT 6295 Query 550232 GATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAAGC- 550290 || |||||||| ||||| |||| | || |||| ||| || || | | ||| Sbjct 6294 GACATGAAGCACTGGCCCTTCCGCGTGGTGAATGAGAGTGGCAAGCCCAAGGTGCAAGTG 6235 Query 550291 ---TACTCATGAAGGATCTGTT--AAACAATTTTCACCAGAACAAATTTCATCTATGGTT 550345 ||| |||| | | | |||| | ||| ||||| |||| || ||||| Sbjct 6234 GAGTAC-----AAGGGTGAGATGAAAACCTTCTTC-CCAGAGGAAATCAGCTCCATGGTC 6181 Query 550346 TTAATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGA-TGCAGT 550404 | | |||||||| | | || || | | |||| | ||| ||| || ||| || Sbjct 6180 CTTACCAAAATGAAGGAGATTGCTGAGGCCTATCTTGGGCGC-AAGGTACAGAATGCTGT 6122 Query 550405 AATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACG 550464 || ||||| || || || || |||||||| || ||||| || || ||||||||||| Sbjct 6121 CATCACTGTGCCTGCTTACTTCAATGACTCTCAGCGTCAGGCCACCAAAGATGCTGGCAC 6062 Query 550465 TATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATA 550524 || |||| |||||||| | ||||||||||| || || || || ||||| | || || Sbjct 6061 CATCACTGGCCTTAATGTGATGCGTATTATCAACGAGCCCACAGCAGCTGCTATAGCCTA 6002 Query 550525 TGGACTTGATAA 550536 ||| | ||||| Sbjct 6001 TGGCTTGGATAA 5990 >seq254718 Length=3011 Score = 107 bits (118), Expect = 2e-17 Identities = 112/147 (76%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 550391 GTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACT 550450 ||||| |||| ||| | ||||||||||| ||||| || ||||| || || || || || Sbjct 1625 GTTACTAATGCTGTAGTGACTGTACCAGCCTATTTCAACGACTCTCAGCGCCAGGCAACA 1684 Query 550451 AAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCT 550510 ||||| |||||| ||||| || || || || || || ||||||||||| || || ||| Sbjct 1685 AAAGACGCTGGAACCATTGCAGGGCTCAACGTGCTGCGAATTATCAATGAGCCAACAGCT 1744 Query 550511 GCTGCACTTGCATATGGACTTGATAAA 550537 ||||| | || ||||| || || ||| Sbjct 1745 GCTGCGATCGCCTATGGTCTGGACAAA 1771 >seq391867 Length=1033 Score = 86.0 bits (94), Expect = 5e-11 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 552507 GGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCC 552566 |||||||| |||||||| | || ||||| || |||||||| || || |||||||||||| Sbjct 196 GGTATTCCCCCTGCTCCCAGAGGTGTACCTCAGATTGAAGTAACCTTTGATATCGATGCC 255 Query 552567 AATGGAATTTTGAATGTGACTGCTTGTGATAA 552598 ||||| || |||| ||| ||||| ||||| Sbjct 256 AATGGCATCCTGAACGTGTCTGCTGTGGATAA 287 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3988644734853200