Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gallirallus_20okinawae_20[genbank_20GCA_5F002003005.1_202017-02-09] 768,680 sequences; 1,114,530,436 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq228257 122 2e-22 seq470410 114 2e-20 seq153058 114 2e-20 seq293044 95.1 2e-14 seq30292 93.3 8e-14 seq59652 84.2 4e-11 >seq228257 Length=1031 Score = 122 bits (134), Expect = 2e-22 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 241415 AGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCCGCAGAACGGACGCGGTATTGGACAGT 241474 ||||||| ||| ||||| ||||| ||||| ||||| || | | ||||| || ||| Sbjct 982 AGGACCTTCTGCTTGAGCTGGGCGACCTGCTCCCGGAGCAGGCTGGCGGTGGAGGCCAGC 923 Query 241475 CCTGCGTTGTCAGACTTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGT 241534 | | ||| | |||||| |||||| ||||||||||| || | ||| || ||||| Sbjct 922 TCCGTGTTCTGGCTCTTGAGGCTCTTCACCTTCTCCTCCAGGCGGGAGATCCGCTCCAGC 863 Query 241535 TTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTG 241594 || | | |||||| |||| || || | ||||||| || | ||| || ||||||||| Sbjct 862 TTCCTCTTGCGGCACTTGGAAGCGGCGATCCGGTTCCTCAGCCGCTTCCGCTCCGCCTTG 803 Query 241595 ATGCGTTCCTGGTCCTCCATGTCGATCGGAGA 241626 ||||| ||||| ||||||||||| || || Sbjct 802 ATGCGCTCCTGCGTGTCCATGTCGATGGGGGA 771 >seq470410 Length=401 Score = 114 bits (126), Expect = 2e-20 Identities = 123/163 (75%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 213528 GTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGG 213587 |||||||||| ||||| |||||||| ||||||||| ||||||||||| |||||| || Sbjct 251 GTGTACTCCACTATCTCTGTGCACAGATTGCTGCATTTGATGGTGCCCAAGTTCTGCTGA 192 Query 213588 TTTGACTTTGCGTTGGCAGAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGG 213647 || ||| |||| || || ||||||||||||||||| | |||||||| |||| Sbjct 191 TTGCTCTTCCTGTTGCAGGAGTCTTTGTAGAGCATGTAGGGCGTGCCGGTCTCGGTCTGG 132 Query 213648 GACACCAGTATCTGGCTCCAGAGGTACCTGGCCTTGACCACCC 213690 ||| | | || | |||||| | | |||||| ||||||| Sbjct 131 GACTCGATGATGGCGTACCAGAGCTGCTGGGCCTTCACCACCC 89 >seq153058 Length=219 Score = 114 bits (126), Expect = 2e-20 Identities = 104/131 (79%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 241497 CCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGG 241556 ||||||| |||||||||||||| |||||||| ||||| || ||||||||||| |||| || Sbjct 219 CCTTCACCTTCTCCTCCAGCCGGGCGATGCGCTCCAGCTTCCGCCGGCGGCACTTGGAGG 160 Query 241557 CTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGT 241616 | || | ||||||||| || | ||| || |||||||| | || || ||| |||| || Sbjct 159 CGGCGATGCGGTTCCGCAGCCGCTTGCGCTCCGCCTTCAGCCGCTCTTGGCTCTCCGCGT 100 Query 241617 CGATCGGAGAC 241627 | | ||| ||| Sbjct 99 CCAGCGGCGAC 89 >seq293044 Length=654 Score = 95.1 bits (104), Expect = 2e-14 Identities = 121/167 (72%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 213174 TAGGGGCCATGCTCCTTGGCCAGCTCGCAGGACGCCTGCAGGGCAGCGTAGTAGATGGTT 213233 ||||| || ||||||||||| || || ||| || | || |||| |||| || ||||| Sbjct 379 TAGGGCCCTTGCTCCTTGGCAAGTTCACAGCTGGCTTCCAAGGCACCGTAATAAATGGTC 438 Query 213234 TCAAATATCTCCCTGTTGAGCTTCTTGGCCTCTGGGGACGTGAAGGGCATCATCATGCGT 213293 ||||| |||| | ||| || | || |||||| || | ||||| | | |||| | Sbjct 439 TCAAAGATCTGCTGGTTCAGGTGCTGGGCCTCAGGACTCTCAAAGGGGAACCTCATAAGG 498 Query 213294 TGGAACACATCAGCCAGCCCCTGGACCCCGATGCCGATGGGTCTGTG 213340 ||| |||| ||||| ||||| || |||||||||||||| | ||| Sbjct 499 ATGAAAGCATCTGCCAGGCCCTGCACGCCGATGCCGATGGGACGGTG 545 >seq30292 Length=3159 Score = 93.3 bits (102), Expect = 8e-14 Identities = 111/151 (74%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 213813 ACTCTCTGCATGAACAGGTCCGGGACCCACAGCGCGGTGAACAGGTCCCTGGTCCTCCTC 213872 |||| || |||||| || || || | ||| || || ||| ||||| |||| | | | Sbjct 1110 ACTCGCTTCATGAAGAGATCAGGAATCCAGAGGGCAAAGAAAAGGTCTCTGGCTCGCTGC 1169 Query 213873 TCGTCCACTCCAGAGTTTTTGCGCAGATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGC 213932 || || |||| ||| || ||| || ||||| |||||||||||| |||||| ||| Sbjct 1170 TCTTCTTTCCCAGTGTTCTTCTTCAGGTCAAGAAACTCAAAGATGTCCAAGTGCCAGGGC 1229 Query 213933 TCCATGTAGATGGCAAAGGCGCCCGGCCTCT 213963 |||| |||||||||||| || || || |||| Sbjct 1230 TCCAGGTAGATGGCAAAAGCCCCAGGTCTCT 1260 >seq59652 Length=1942 Score = 84.2 bits (92), Expect = 4e-11 Identities = 102/139 (73%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 212915 TATCTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTAGGGCTCGAT 212974 || |||||| || || ||||| || || | | ||| | ||| |||||||||||||| Sbjct 1180 TACCTGGAACTCTCCGGAGAGGACTCTGCGCGTGTAGATGTTGCTGGTGTAGGGCTCGAT 1239 Query 212975 GCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGAGCCACCAGGAG 213034 | |||||| || |||| ||||| |||||| || || |||||||||| | || || Sbjct 1240 GGACTCGTTATTGCCCAAGATCTGAGCAGTGGAAGCAGTCGGCATGGGAGAGAGGAGCAG 1299 Query 213035 ACTGTTCCTCACTCCGTGC 213053 ||||| || || |||||| Sbjct 1300 GCTGTTTCTGACACCGTGC 1318 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 922582167091200