Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gallirallus_20okinawae_20[genbank_20GCA_5F002003005.1_202017-02-09] 768,680 sequences; 1,114,530,436 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq4859 147 1e-29 seq391867 89.7 3e-12 >seq4859 Length=13494 Score = 147 bits (162), Expect = 1e-29 Identities = 366/551 (66%), Gaps = 6/551 (1%) Strand=Plus/Minus Query 474329 GCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAA 474388 || || || || || || || || || ||| || || | ||| | || |||| ||| Sbjct 6534 GCTATCGGCATCGACTTGGGCACCACATACTCCTGCGTGGGTGTCTTCCAGCATGGCAAA 6475 Query 474389 GTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACT 474448 || || || || ||||||||||| || || | || || || ||||| | || ||| Sbjct 6474 GTGGAGATCATCGCCAATGACCAGGGCAACCGCACCACGCCCAGCTATGTGGCCTTCACT 6415 Query 474449 GAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAAT 474508 || ||||| | || || || |||||||| || | || | || || ||| || Sbjct 6414 GATACTGAGCGCCTCATCGGGGATGCTGCCAAGAACCAGGTGGCTATGAACCCTACCAAC 6355 Query 474509 ACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCT 474568 || || |||||||| || | | || || || || | |||||| |||| || |||||| Sbjct 6354 ACCATCTTTGATGCCAAGCGTCTCATCGGCCGCAAGTATGATGACCCCACGGTGCAATCT 6295 Query 474569 GATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATAGAA--G 474626 || ||| || ||||| || ||| | |||| |||| || || | | || | Sbjct 6294 GACATGAAGCACTGGCCCTTCCGCGTGGTGAATGAGAGTGGCAAGCCCAAGGTGCAAGTG 6235 Query 474627 CAATACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAG 474686 | |||| | ||||| | ||| || | || || |||| || ||||| | Sbjct 6234 GAGTACAAG--GGTGAGATGAAAACCTTCTTCCCAGAGGAAATCAGCTCCATGGTCCTTA 6177 Query 474687 CCAAAATGAAACAAACCGC-GAGCTCATATCTTGGACAAGAAGTAACTGATGCAGTAATT 474745 |||||||||| | | || ||| | |||||||| | | ||| |||| || || Sbjct 6176 CCAAAATGAAGGAGATTGCTGAG-GCCTATCTTGGGCGCAAGGTACAGAATGCTGTCATC 6118 Query 474746 ACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATT 474805 ||||| || || || || ||||| ||||| ||||| || || |||||||| || | || Sbjct 6117 ACTGTGCCTGCTTACTTCAATGACTCTCAGCGTCAGGCCACCAAAGATGCTGGCACCATC 6058 Query 474806 GCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGT 474865 | || |||||||| | |||||||| || || || |||||||| || | || ||||| Sbjct 6057 ACTGGCCTTAATGTGATGCGTATTATCAACGAGCCCACAGCAGCTGCTATAGCCTATGGC 5998 Query 474866 CTTGATAAGAA 474876 | |||||||| Sbjct 5997 TTGGATAAGAA 5987 >seq391867 Length=1033 Score = 89.7 bits (98), Expect = 3e-12 Identities = 75/92 (82%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 476090 GGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCA 476149 |||||||| |||||||||||||| || ||||| |||||||| || |||||||| ||||| Sbjct 196 GGTATTCCCCCTGCTCCCAGAGGTGTACCTCAGATTGAAGTAACCTTTGATATCGATGCC 255 Query 476150 AATGGTATTCTTAATGTTACTGCTTGTGATAA 476181 ||||| || || || || ||||| ||||| Sbjct 256 AATGGCATCCTGAACGTGTCTGCTGTGGATAA 287 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3235206785164640