Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gallirallus_20okinawae_20[genbank_20GCA_5F002003005.1_202017-02-09] 768,680 sequences; 1,114,530,436 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value seq42931 271 9e-68 seq14356 143 3e-29 >seq42931 Length=3913 Score = 271 bits (300), Expect = 9e-68 Identities = 623/931 (67%), Gaps = 8/931 (1%) Strand=Plus/Minus Query 160033 AGAT-CAGCGATCTGTGTCGCAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACG 160091 |||| ||| | | ||||||||| || || |||| ||||| || || || |||||| Sbjct 1296 AGATGCAGAGCTTTGTGTCGCAAATACTCTTCCAAACATTTTACTGCAAAGGGGTCAACA 1237 Query 160092 TCTTCGTCGAATTTATTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCT 160151 || |||||| || || || || | ||||| ||| ||| ||||||| || |||| Sbjct 1236 TCAGTGTCGAACTTGTTAGCAAAGAAGTGGTG---GTTTCGTAACATCCAGTTCAGGTCT 1180 Query 160152 CCGGACCCGAACACGCAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCT 160211 || ||| || || ||||| || || ||||| || ||| |||| || ||||| | || Sbjct 1179 CCTACCCCAAAAACACAGACAGAGCGAATGTGAACTCCGCTGCATGGTGGGTAGGGTGCA 1120 Query 160212 CCTTTCGCCACGTCACCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATG 160271 || || | ||| |||||||| ||||||||||||| ||||||||||| | || | |||| Sbjct 1119 CCCTTGGACACATCACCTTCAAAGTACTGCCACTTGACAAACCTGGCCAGTGCATTCATG 1060 Query 160272 TCGGAGGTGTCGTATTTGTACATCAG-GGGAACGGCACCGGGAACGCCGGGCATACGCTG 160330 || || |||||| |||| || || | ||| ||||| || || | || || | ||| Sbjct 1059 TCAGAAACGTCGTACTTGT-CACTAGATGAAACTGCACCTGGGACTTCAGGGATTCTCTG 1001 Query 160331 TAGGGTGGCCCACAGGTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTC 160390 || || |||||||||| || || |||||||| ||||| || | ||| || ||||| | Sbjct 1000 TATTGTTGCCCACAGGTACTCATCTGGGCTGTAAGTGTCTTTTGCCCACTCAATGAAGTT 941 Query 160391 TCCGATTAACCTGTCCCGCAGAACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGC 160450 ||| ||| | | ||| || | |||| | || ||||| || || Sbjct 940 GAGTATTTTGCTGCTTTCTAATATGTGCTCGACAAATCTTCTGCTAACTACAAAATAGGC 881 Query 160451 GCTGCCGGAGAATATCGGTATGGGTATAGGCGGCGTGTCTTTGTCCTGACCGGTGTTAGA 160510 || || || || || || || | |||||| | |||||| ||| ||||| Sbjct 880 ACTACCAGAAAAAATTGGAGTGCTGAGAGGCGGTAGCTGTTTGTCTACACCTGTGTTCTT 821 Query 160511 CACCACTCCTTTCACCAGCGCGTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCAT 160570 | || | | | | | || | || |||||||| || || | ||||| Sbjct 820 TATTTTACCATCAATAACCTCATGGTGTTTTTTCCACCTTACTTCTTTATAAACAGGCAT 761 Query 160571 GCGTTCCGTCTCTAGACTGTTGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAG 160630 |||||| || | ||||| |||| | || | ||| | || | || || || | Sbjct 760 TTTTTCCGTTTCCAAGCTGTTTTCACCTTTAAGAGCTTTTAACTTTTCCACTATTTCCTG 701 Query 160631 GTTCGTCTTGAGCGGAAAGTCGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCT 160690 ||| ||||| | |||||||| | || || | ||| || | ||| ||||| || | || Sbjct 700 GTTGGTCTTTATAGGAAAGTCCATGCCACAGAGGTTAATTAGGTATTTCCAGTTTGAACT 641 Query 160691 CAGGTCGTGCAGGTCCCTCATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTA 160750 || || || ||||||| ||||| ||||| ||||| | |||||| ||||| || Sbjct 640 TCTTCTGTAGAGATCTTTCATGCAGTTAATGTCTGCTTGCACCCTGCTCCATGAAGCATA 581 Query 160751 CACTACGTTCTCTAGTTTACTGGCCACAAAGACGTTATCGAAACACGACACGATTCCCAC 160810 || ||| |||||| | |||| | |||||| ||||| ||||| || || |||||| Sbjct 580 TACAACGCTCTCTAACTGGCTGGAAATAAAGACATTATCAAAACATGAGACTATTCCCTT 521 Query 160811 CACCGCCAGAAAGAACATCTTAT-CCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCT 160869 ||| | |||||| || | || | | |||| ||| || || | || || | ||||| Sbjct 520 CACAG-CAGAAAAAAAAGATTCTGGAGACTTTTTGTCAACATGAATACAGTAGAAGTTCT 462 Query 160870 GAGGCGCGTAGATGGCCCTGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGA 160929 |||| || ||||| | || || | || || | ||||||||| || |||| | ||| | Sbjct 461 GAGGGGCATAGATTGATCTCAGAAGTCTATCAAGCATCTCTATTTTGTGATAAACCACTA 402 Query 160930 TAGAGTAGGCTATCGGAAACTCGGTCTCCTC 160960 | ||||| || || ||||| || | ||||| Sbjct 401 TTGAGTAAGCAATTGGAAATTCTGCTTCCTC 371 >seq14356 Length=31392 Score = 143 bits (158), Expect = 3e-29 Identities = 239/345 (69%), Gaps = 3/345 (1%) Strand=Plus/Plus Query 160044 CTGTGTCGCAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAAT 160103 ||||| ||||| || || || ||||| ||| |||| |||| || |||||| Sbjct 30322 CTGTGGCGCAGGTGCTCCTCGAGACACAGGATGGCGGCATCGTCCACCAAGGGGTCGAAC 30381 Query 160104 TTATTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAAC 160163 || || || | || ||||| | ||| || | |||| | |||||||| | |||| | Sbjct 30382 TTGTTGGCCAGGAGGTGGTGC---TGCTGGAGCAGCCAGGGGACGTCTCCCGTCCCGTAG 30438 Query 160164 ACGCAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACG 160223 | |||||||| || |||| |||| |||| |||||||| | || || || | Sbjct 30439 ATGCAGACGGCGCGCTGGTGCTTGCCGGTGCAGGGCGGGTAGGGCGCACCCTTGCTGGTG 30498 Query 160224 TCACCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCG 160283 || || || |||||||||||| || | | || | || | |||||| ||| | | Sbjct 30499 TCGCCCTCCAGGTACTGCCACTTGACCATGCGGGGAAGGGCGTTCATGTCCGAGAGCTGG 30558 Query 160284 TATTTGTACATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCAC 160343 || |||| || |||| | |||||| || ||||| ||||| || | ||||||||||| Sbjct 30559 TACTTGTCATTCTGGGGTATGGCACCCGGCACGCCAGGCATGCGGTTGAGGGTGGCCCAT 30618 Query 160344 AGGTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAAC 160388 | ||| ||||| |||||||| |||||||| | ||| || | |||| Sbjct 30619 ACGTGCTCGTCAGGGCTGTAGGTGTCCTTGGCCCACTCAAGGAAC 30663 Score = 89.7 bits (98), Expect = 6e-13 Identities = 184/272 (68%), Gaps = 4/272 (1%) Strand=Plus/Plus Query 160700 CAGGTCCCTCATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTT 160759 ||||||| |||||| || | || ||||||| ||| |||||| || || || || || Sbjct 30972 CAGGTCCTGCATGCAGTTGAGGTCAGCCTGCAGCCGGGACCAGGAGGCATAGACCACCTT 31031 Query 160760 CTCTAGTTTACTGGCCACAAAGACGTTATCGAAACACGACACGATTCCCACCACCGCCAG 160819 || || || |||||||||||||| ||| || | ||||| || ||| ||| Sbjct 31032 TTCCAGGCGGCTAGCCACAAAGACGTTGGGGAAGCAGGCTACGATGGCCCGCACGGCCTC 31091 Query 160820 AAAGAA--CATCTTATCCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCG 160877 ||| || || | | ||| ||| | ||| | ||| || | |||||| || | Sbjct 31092 CTGGAAGTCAGCTGA--GGACTTGTTGTCGATGTGGATGCAGTAGACGTTCTGGGGGGTA 31149 Query 160878 TAGATGGCCCTGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAG 160937 || | | || || | || ||| |||||||| || || | ||||| || || |||||| Sbjct 31150 TACAGAGACCGCAGGAGCCGCTCAAACATCTCAATTTTGTCGTGGATGACCATGGAGTAG 31209 Query 160938 GCTATCGGAAACTCGGTCTCCTCGCGACTCAG 160969 || || || ||||| | ||||| ||||||| Sbjct 31210 GCGATGGGGAACTCTGCTTCCTCCTGACTCAG 31241 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571672989316800