Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gallirallus_20okinawae_20[genbank_20GCA_5F002003005.1_202017-02-09] 768,680 sequences; 1,114,530,436 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq92776 86.0 7e-12 seq102374 82.4 9e-11 >seq92776 Length=9696 Score = 86.0 bits (94), Expect = 7e-12 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 65441 AGAATCCATTTGACTTTATGGAAAACATTAGCCTTGATGGGAAGACCAACTTCTTTGAGA 65500 ||||||| |||||||| ||||||||||| || || || ||||||||||||||||||| Sbjct 5674 AGAATCCTTTTGACTTCATGGAAAACATCTCTCTGGAAGGCAAGACCAACTTCTTTGAGA 5733 Query 65501 AGCGAGTTGGGGACTAT 65517 ||||||| || || ||| Sbjct 5734 AGCGAGTAGGTGAATAT 5750 >seq102374 Length=14565 Score = 82.4 bits (90), Expect = 9e-11 Identities = 94/124 (76%), Gaps = 2/124 (2%) Strand=Plus/Minus Query 65087 TTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGC-GCTATTTATTGG 65145 |||| ||||| || || || |||||||| || || || || ||| ||||| | |||| Sbjct 3516 TTGCCTTTGCTGCAGTTGAAGGCATCTTCTTTTCGGGTTCCTT-TGCTGCTATATTTTGG 3458 Query 65146 TTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTTATTTCCCGAGAT 65205 |||||||| | || || ||||| || || |||||| |||||||||||| | ||||| Sbjct 3457 CTGAAGAAGAGAGGCCTGATGCCTGGACTGACCTTCTCCAATGAACTTATTAGCAGAGAT 3398 Query 65206 GAGG 65209 |||| Sbjct 3397 GAGG 3394 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 590837460998400