Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gallirallus_20okinawae_20[genbank_20GCA_5F002003005.1_202017-02-09]
768,680 sequences; 1,114,530,436 total letters
Query= NC_020852.1
Length=186468
Score E
Sequences producing significant alignments: (Bits) Value
seq92776 86.0 7e-12
seq102374 82.4 9e-11
>seq92776
Length=9696
Score = 86.0 bits (94), Expect = 7e-12
Identities = 65/77 (84%), Gaps = 0/77 (0%)
Strand=Plus/Plus
Query 65441 AGAATCCATTTGACTTTATGGAAAACATTAGCCTTGATGGGAAGACCAACTTCTTTGAGA 65500
||||||| |||||||| ||||||||||| || || || |||||||||||||||||||
Sbjct 5674 AGAATCCTTTTGACTTCATGGAAAACATCTCTCTGGAAGGCAAGACCAACTTCTTTGAGA 5733
Query 65501 AGCGAGTTGGGGACTAT 65517
||||||| || || |||
Sbjct 5734 AGCGAGTAGGTGAATAT 5750
>seq102374
Length=14565
Score = 82.4 bits (90), Expect = 9e-11
Identities = 94/124 (76%), Gaps = 2/124 (2%)
Strand=Plus/Minus
Query 65087 TTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGC-GCTATTTATTGG 65145
|||| ||||| || || || |||||||| || || || || ||| ||||| | ||||
Sbjct 3516 TTGCCTTTGCTGCAGTTGAAGGCATCTTCTTTTCGGGTTCCTT-TGCTGCTATATTTTGG 3458
Query 65146 TTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTTATTTCCCGAGAT 65205
|||||||| | || || ||||| || || |||||| |||||||||||| | |||||
Sbjct 3457 CTGAAGAAGAGAGGCCTGATGCCTGGACTGACCTTCTCCAATGAACTTATTAGCAGAGAT 3398
Query 65206 GAGG 65209
||||
Sbjct 3397 GAGG 3394
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 590837460998400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |