Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gallirallus_20okinawae_20[genbank_20GCA_5F002003005.1_202017-02-09] 768,680 sequences; 1,114,530,436 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq4859 347 2e-90 seq254718 149 8e-31 seq101884 104 3e-17 seq146049 95.1 2e-14 seq391867 86.0 8e-12 >seq4859 Length=13494 Score = 347 bits (384), Expect = 2e-90 Identities = 1050/1599 (66%), Gaps = 41/1599 (3%) Strand=Plus/Minus Query 195299 GCTATTGGTATCGATTTAGGAACTACTTACTCATGTGTTGGTGTATGGCAAAATGATCGT 195358 ||||| || ||||| || || || || ||||| || || ||||| | || ||| Sbjct 6534 GCTATCGGCATCGACTTGGGCACCACATACTCCTGCGTGGGTGTCTTCCAGCATGGCAAA 6475 Query 195359 GTAGAGATTATCCCGAATGACCAAGGAAACCGTACAACTCCATCGTACGTTGCCTTTACA 195418 || ||||| ||| | |||||||| || ||||| || || || || || ||||| || Sbjct 6474 GTGGAGATCATCGCCAATGACCAGGGCAACCGCACCACGCCCAGCTATGTGGCCTTCACT 6415 Query 195419 GATAATGAACGTCTCGTTGGAGATGCCGCAAAAAATCAGACAGCTATGAACCCTATCAAT 195478 |||| ||| || ||| | || ||||| || || || ||| ||||||||||||| ||| Sbjct 6414 GATACTGAGCGCCTCATCGGGGATGCTGCCAAGAACCAGGTGGCTATGAACCCTACCAAC 6355 Query 195479 ACTGTCTTTGACGCGAAGCGTCTTATTGGTCGCAAGTTTTCGGATAAGAAAGTCCAAGAC 195538 || ||||||| || |||||||| || || ||||||| | || | || ||| Sbjct 6354 ACCATCTTTGATGCCAAGCGTCTCATCGGCCGCAAGTATGATGACCCCACGGTGCAATCT 6295 Query 195539 GATATAAAGGACTGGTCTTATGAAGTTGTTCCCG-GTGTGGCTGATAAGCCTATGATTAA 195597 || || ||| ||||| | | || || | | ||||| ||||| | | | | Sbjct 6294 GACATGAAGCACTGGCCCTTCCGCGTGGTGAATGAGAGTGGC----AAGCCCAAGGTGCA 6239 Query 195598 TGTTGAATTTCACGGTGAGAAGAAACAATTTGCTCCC-GAAGAAATTTCGTCTATGGTGT 195656 || || | | ||||||| |||| | || |||| || ||||| || ||||| Sbjct 6238 AGTGGAGTACAAGGGTGAGATGAAA-ACCTTCTTCCCAGAGGAAATCAGCTCCATGGTCC 6180 Query 195657 TGATTAAGATGAAGGAGACTGCGGAATCTT-TCATGGGTAAAACTGTGAAAGATGCAGTT 195715 | | || |||||||||| ||| || | | || |||| || || | |||| || Sbjct 6179 TTACCAAAATGAAGGAGATTGCTGAGGCCTATCTTGGGCGCAAG-GTACAGAATGCTGTC 6121 Query 195716 GTGACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCT 195775 | ||||| ||||||||||||| ||| || || || ||||| || || || |||| | Sbjct 6120 ATCACTGTGCCTGCTTACTTCAATGACTCTCAGCGTCAGGCCACCAAAGATGCTGGCACC 6061 Query 195776 ATTGCGGGTCTAAACTGTCTTA-GAATTATCAATGAACCAACAGCGGCTGCAATTGCTTA 195834 || | || || || ||| | | |||||||| || || ||||| ||||| || || || Sbjct 6060 ATCACTGGCCTTAA-TGTGATGCGTATTATCAACGAGCCCACAGCAGCTGCTATAGCCTA 6002 Query 195835 TGGTCTGGACAAGAACAAGGAC-------GAAGATAAAAATGTATTGATCTTTGATCTCG 195887 ||| |||| ||||| | | || | || || ||||| | |||||||| | | Sbjct 6001 TGGCTTGGATAAGAA-AGGTACCCGAGCTGGTGAGAAGAATGTGCTCATCTTTGACTTGG 5943 Query 195888 GTGGTGGTACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGG 195947 | || || || |||||||| || | || | ||||| | ||| || || || || ||| Sbjct 5942 GAGGGGGCACTTTTGATGTGTCCATCCTTACCATTGAGGATGGCATCTTTGAGGTGAAGT 5883 Query 195948 CTACTGCTGGTGATACTCATCTAGGTGGTGAAGATTTCGATGCACGTCTTCTCCGTCATT 196007 | || |||||||| || ||||| ||||| || || || || || | | |||| Sbjct 5882 CCACAGCTGGTGACACCCATCTGGGTGGGGAGGACTTTGACAACCGCATGGTGAACCATT 5823 Query 196008 TGTCTGATGAGTTCCGTCGAAAGAATAAGAAAGATATTTCTGGAAATCCTAGGGCTCTTC 196067 | || || ||| || ||| | ||| |||||| |||| || | || | Sbjct 5822 TTGTGGAAGAATTCAAGCGTAAGCACAAGCGTGATATTGCTGGCAACAAGCGAGCAGTGA 5763 Query 196068 GTCGGCTTAGGACTGCATGTGAACGTGCCAAACGAACTCT---CTCTTCTACGGCTCAAA 196124 | || || | || || ||||| | || || || || || |||||| || ||| Sbjct 5762 GGCGACTGCGTACAGCTTGTGAGAGGGCAAAGCGCACCCTAAGCTCTTCCACA---CAAG 5706 Query 196125 CAATGGTTGAGATTGATTCGTTGTTTGACGGAATTGACTTCTATACAACTATTACCCGTG 196184 | | |||||||||| || | || || || ||||||||||| || | ||||| |||| Sbjct 5705 CTAGCATTGAGATTGACTCTCTCTTCGAGGGTATTGACTTCTACACCTCCATTACTCGTG 5646 Query 196185 CACGTTTTGAAGAGTTAAACTCTGATTTGTTTAGGAAGTGTATGGAACCTGTTGAACAAG 196244 | || || || ||| | || ||||| | || | |||| || | || | ||| Sbjct 5645 CCCGCTTCGAGGAGCTCAATGCTGATCTTTTCCGTGGCACCCTGGAGCCAG-TGGAGAAG 5587 Query 196245 TACTT-CGTGACGCAAAGATGGATAAGTCTAAGGTTGATGAAATTGTCCTTGTGGGAGGA 196303 ||| ||||| || ||| | || ||| | | | || || || || ||||| || Sbjct 5586 GCCTTGCGTGATGCCAAGCTAGACAAGGGCCAAATCCAGGAGATCGTGCTGGTGGGTGGC 5527 Query 196304 TCAACCCGTATTCCGAAGATTCAACAGATGCTTTCTAGCTTCTTCAATAATAAAGATTTA 196363 || |||||||| || ||||| ||| || |||| |||||||||| ||||| | Sbjct 5526 TCTACCCGTATCCCCAAGATCCAAAAGCTGCTACAGGACTTCTTCAATGGCAAAGAGCTC 5467 Query 196364 AACAAAACGATCAACCCGGATGAAGCAGTTGCTTATGGTGCGGCCGTTCAGGCTGCTATT 196423 ||||| | |||||||| ||||| || ||||| || || || ||||| || || ||||| Sbjct 5466 AACAAGAGCATCAACCCTGATGAGGCTGTTGCCTACGGCGCTGCCGTGCAAGCGGCTAT- 5408 Query 196424 CTCTCAGGTGTTGACAA---TAATAACGTCCAAGATCTTCTGCTACTTGATGTTGCACCC 196480 |||| | | ||||| | | || || || ||||| ||||| | ||||| | || Sbjct 5407 -CCTCATG-GGAGACAAGTCTGAGAATGTGCAGGATCTGCTGCTGTTGGATGTCACCCCT 5350 Query 196481 GTATCCCTGGGTCTTGAAACAGCGGGTGGTGTTATGACTAAAATTATTGATAGGAACACA 196540 | |||||||| | || ||||| ||||| || ||||| | || | | || || Sbjct 5349 CTGTCCCTGGGCATCGAGACAGCTGGTGGAGTGATGACCGCTCTCATCAAGCGCAATACC 5290 Query 196541 ACTATTCCGACTAAGAAGGAACAAGTCTTTTCAACGTATTCCGATAATCA-ACCAGGTGT 196599 || ||||| || ||| | || ||| | || || || || || || | || | || Sbjct 5289 ACCATTCCCACCAAGCAAACTCAGACCTTCACCACTTACTCGGACAACCAGAGCA-GCGT 5231 Query 196600 TCATATTCAAGTATATGAAG--GAGAACGCTCCCGTG-CAAAGGATAACCATCTACTTGG 196656 | | || ||||| || | |||| ||| || | ||||| ||| | | ||||| Sbjct 5230 CCTGGTCCAGGTATACGAGGGCGAGAGGGCT---ATGACGAAGGACAACAACTTGCTTGG 5174 Query 196657 AACTTTCGATTTGACGGGGATTCCAGCTGCACCCAGAGGTGTTCCACAGATTAATGTTTG 196716 | || || | ||||| || || | |||||| | || || || ||||| | || Sbjct 5173 CAAGTTTGACCTAACGGGCATCCCTCCAGCACCCCGTGGAGTCCCCCAGATCGAGGTCAC 5114 Query 196717 CTTCGATATAGACGCAAATGGAATTCTAAACGTCACAGCTGAGGACAAGGCTTCTGGCAA 196776 || || || || || ||||| || || || |||| || | ||||||| | || || Sbjct 5113 TTTTGACATCGATGCCAATGGTATCCTGAATGTCAGTGCCGTGGACAAGAGCACGGGTAA 5054 Query 196777 ATCTGAAAAGATTGTGATTACCAATGACAAGGGGCGGCTTTCTAAGGAGGAAATTGAACG 196836 | ||||| || ||||| |||||||| || ||| ||||| || ||||| || Sbjct 5053 GGAGAACAAGATCACCATCACCAACGACAAGGGTCGCCTTAGCAAGGATGACATTGACCG 4994 Query 196837 TATGGTTCAAGATGCGGAAAAGTACAGGGAAGAAGACGA 196875 |||||| ||||| || || || |||| | ||| || || Sbjct 4993 TATGGTGCAAGAAGCAGAGAAATACAAAGCAGAGGATGA 4955 >seq254718 Length=3011 Score = 149 bits (164), Expect = 8e-31 Identities = 351/530 (66%), Gaps = 0/530 (0%) Strand=Plus/Plus Query 195875 ATCTTTGATCTCGGTGGTGGTACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATA 195934 ||||| || || |||||||| || |||||||| || |||||| |||||||| ||| || Sbjct 1885 ATCTTCGACCTGGGTGGTGGCACCTTTGATGTGTCCATTCTCACTATTGAAGATGGCATC 1944 Query 195935 TTCGAAGTAAAGGCTACTGCTGGTGATACTCATCTAGGTGGTGAAGATTTCGATGCACGT 195994 || || || || | || || ||||| ||||| | || || ||||| ||||| || Sbjct 1945 TTTGAGGTGAAATCCACAGCAGGTGACACTCACTTGGGCGGAGAAGACTTCGACAACCGC 2004 Query 195995 CTTCTCCGTCATTTGTCTGATGAGTTCCGTCGAAAGAATAAGAAAGATATTTCTGGAAAT 196054 | || || || | ||||||| || ||| | ||||| || || | || Sbjct 2005 ATGGTCAACCACTTCATCGCTGAGTTCAAGCGCAAGCACAAGAAGGACATCAGCGAGAAC 2064 Query 196055 CCTAGGGCTCTTCGTCGGCTTAGGACTGCATGTGAACGTGCCAAACGAACTCTCTCTTCT 196114 | || |||| || || | ||||| || || || ||||| || || || || || Sbjct 2065 AAGCGAGCCGTTCGGCGCCTCCGCACTGCCTGCGAGCGCGCCAAGCGCACCCTGTCCTCC 2124 Query 196115 ACGGCTCAAACAATGGTTGAGATTGATTCGTTGTTTGACGGAATTGACTTCTATACAACT 196174 | | || | | ||||||||||||| | | ||| || ||||||||||| || | Sbjct 2125 AGCACGCAGGCCAGTATTGAGATTGATTCTCTCTATGAGGGTATTGACTTCTACACGTCC 2184 Query 196175 ATTACCCGTGCACGTTTTGAAGAGTTAAACTCTGATTTGTTTAGGAAGTGTATGGAACCT 196234 || ||| | || || ||||||||| | || |||| |||| | |||| || Sbjct 2185 ATCACCAGAGCTCGCTTTGAAGAGCTGAATGCTGACCTGTTCCGCGGCACCCTGGATCCC 2244 Query 196235 GTTGAACAAGTACTTCGTGACGCAAAGATGGATAAGTCTAAGGTTGATGAAATTGTCCTT 196294 || ||| | | || || || || ||| |||| || || || | | || || || || Sbjct 2245 GTGGAAAAGGCCCTGCGGGATGCCAAGCTGGACAAATCACAGATCCACGACATCGTGCTG 2304 Query 196295 GTGGGAGGATCAACCCGTATTCCGAAGATTCAACAGATGCTTTCTAGCTTCTTCAATAAT 196354 ||||| || || || ||||| || ||||| || | |||| |||||||| Sbjct 2305 GTGGGTGGCTCCACTCGTATCCCAAAGATCCAGAAACTGCTGCAGGATTTCTTCAACGGC 2364 Query 196355 AAAGATTTAAACAAAACGATCAACCCGGATGAAGCAGTTGCTTATGGTGC 196404 || || | ||||| | |||||||| |||||||| || |||||||| || Sbjct 2365 AAGGAGCTCAACAAGAGCATCAACCCTGATGAAGCCGTGGCTTATGGCGC 2414 Score = 116 bits (128), Expect = 5e-21 Identities = 111/142 (78%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 195708 ATGCAGTTGTGACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACG 195767 |||| || ||||||||||| || || |||| || || || || ||||| ||||| |||| Sbjct 1632 ATGCTGTAGTGACTGTACCAGCCTATTTCAACGACTCTCAGCGCCAGGCAACAAAAGACG 1691 Query 195768 CTGCTGCTATTGCGGGTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAA 195827 ||| | ||||| || || ||| || ||||||||||||| |||||||| ||||| | Sbjct 1692 CTGGAACCATTGCAGGGCTCAACGTGCTGCGAATTATCAATGAGCCAACAGCTGCTGCGA 1751 Query 195828 TTGCTTATGGTCTGGACAAGAA 195849 | || |||||||||||||| || Sbjct 1752 TCGCCTATGGTCTGGACAAAAA 1773 >seq101884 Length=11746 Score = 104 bits (114), Expect = 3e-17 Identities = 75/87 (86%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 171963 AGGCATTCCACCCGATCAGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACG 172022 ||||||||| || |||||||| ||||| |||||||||||||| ||||| ||||||||||| Sbjct 4193 AGGCATTCCTCCTGATCAGCAGCGACTCATTTTTGCTGGTAAGCAGCTAGAAGATGGACG 4252 Query 172023 TACCCTCGCTGATTACAACGTTCAAAA 172049 || || |||| |||||| ||||||| Sbjct 4253 CACGCTGTCTGACTACAACATTCAAAA 4279 >seq146049 Length=5037 Score = 95.1 bits (104), Expect = 2e-14 Identities = 125/173 (72%), Gaps = 3/173 (2%) Strand=Plus/Minus Query 195815 ACAGCGGCTGCAATTGCTTATGGTCTGGACAAGAACAAGGACGAAGATAAAAATGTATTG 195874 ||||| ||||| || || ||||| |||||||||| ||| ||| || ||| | || Sbjct 3870 ACAGCAGCTGCCATCGCATATGGACTGGACAAGAGAGAGGG---AGAGAAGAATATCCTG 3814 Query 195875 ATCTTTGATCTCGGTGGTGGTACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATA 195934 | ||||| | |||||||| || ||||||||||| || |||| ||||| ||| | Sbjct 3813 GTGTTTGACTTGGGTGGTGGAACCTTTGATGTCTCCCTGCTCACAATTGACAATGGAGTG 3754 Query 195935 TTCGAAGTAAAGGCTACTGCTGGTGATACTCATCTAGGTGGTGAAGATTTCGA 195987 || ||||| ||| ||| |||||| || || || ||||| ||||| || || Sbjct 3753 TTTGAAGTTGTGGCCACTAATGGTGACACCCACCTGGGTGGAGAAGACTTTGA 3701 >seq391867 Length=1033 Score = 86.0 bits (94), Expect = 8e-12 Identities = 141/201 (70%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 196610 GTATATGAAGGAGAACGCTCCCGTG-CAAAGGATAACCATCTACTTGGAACTTTCGATTT 196668 || ||||||||||| || | | || | ||||| ||| | | || || | || || | Sbjct 133 GTTTATGAAGGAGAGCG-TGCTATGACTAAGGACAACAACTTGCTGGGCAAGTTTGAGCT 191 Query 196669 GACGGGGATTCCAGCTGCACCCAGAGGTGTTCCACAGATTAATGTTTGCTTCGATATAGA 196728 ||| || ||||| |||| ||||||||||| || |||||| | || ||| ||||| || Sbjct 192 GACCGGTATTCCCCCTGCTCCCAGAGGTGTACCTCAGATTGAAGTAACCTTTGATATCGA 251 Query 196729 CGCAAATGGAATTCTAAACGTCACAGCTGAGGACAAGGCTTCTGGCAAATCTGAAAAGAT 196788 || ||||| || || ||||| | |||| ||| ||| ||||||| | ||||| Sbjct 252 TGCCAATGGCATCCTGAACGTGTCTGCTGTGGATAAGAGCACTGGCAAGGAGAACAAGAT 311 Query 196789 TGTGATTACCAATGACAAGGG 196809 || || ||||||||||| Sbjct 312 CACAATAACAAATGACAAGGG 332 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 651541329129600