Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gallirallus_20okinawae_20[genbank_20GCA_5F002003005.1_202017-02-09] 768,680 sequences; 1,114,530,436 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq272297 176 5e-38 seq317416 131 2e-24 seq184925 105 8e-17 seq470410 102 1e-15 seq92776 98.7 1e-14 >seq272297 Length=239 Score = 176 bits (194), Expect = 5e-38 Identities = 160/202 (79%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||||| |||||| ||| | ||| |||||||| ||||||||||| |||| | || Sbjct 32 GCTTGGCCAACTCGCCGGGCAGCAGCAGCCGCACGGCCGTCTGGATCTCCCGCGAGGTGA 91 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| |||||||||| || ||||||| | ||||||| |||| | Sbjct 92 TGGTGGAGCGCTTGTTGTAGTGCGCCAGGCGCGAGGCCTCGCCGGCGATGCGCTCGAAGA 151 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| || |||||||||| ||| | |||| ||||||||| |||||||| Sbjct 152 TGTCGTTGACGAAGGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGT 211 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||||||||| ||||||||||| Sbjct 212 GCACCTGCTTCAGCACCTTGTA 233 >seq317416 Length=226 Score = 131 bits (144), Expect = 2e-24 Identities = 149/200 (75%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || || | | | || |||||||| ||||||||||| || | | || Sbjct 200 GCTTGGCCAGCTCTCCTGGGAGCAGGAGCCGCACGGCTGTCTGGATCTCCCGGGAGGTGA 141 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| |||| ||||| ||| ||| || ||||||| |||| | Sbjct 140 TGGTGGAGCGCTTGTTGTAGTGGGCCAGGCGGGAGGCTTCTCCAGCGATGCGCTCGAAGA 81 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||||||||| |||||||||| ||| | |||| ||||||||| |||||||| Sbjct 80 TGTCGTTGACAAAGGAGTTCATGATGCCCATGGCCTTGGAGGAGATGCCGGTGTCGGGGT 21 Query 1254523 GCACCTGCTTGAGCACCTTG 1254542 | || ||||| ||||| ||| Sbjct 20 GGACTTGCTTCAGCACTTTG 1 >seq184925 Length=1551 Score = 105 bits (116), Expect = 8e-17 Identities = 136/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| | ||| |||||||| ||||| | |||||| || || Sbjct 1169 GCTTGGCCAGCTCCCCGGGCAGCAGCAGCCGCACGGCCGTCTGCACCTCGCGGCTGGTGA 1110 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||| | | | || ||||| || ||||||| | | || |||| || Sbjct 1109 TGGTGCAGCGCTGGGTGTACTGGGCCAGGCGCGACGCCTCGGCCGCCAGCCGCTCGAACA 1050 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||||| || |||||||||| ||| | |||| ||||||||| ||| |||| Sbjct 1049 GGTCGTTGACGAAGGAGTTCATGATGCTCATGGCCTTGGAGGAGATGCCGGTGTCCGGGT 990 Query 1254523 GCACCTGC 1254530 |||||||| Sbjct 989 GCACCTGC 982 >seq470410 Length=401 Score = 102 bits (112), Expect = 1e-15 Identities = 124/169 (73%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 1628167 ACGATCTCGGTGCACAGGTTGGCCGACGTCGTCGTACCCAGGTTCTGCTGGTTGGTGGTC 1628226 || ||||| |||||||| ||| | | | || |||| ||||||||| ||| | || Sbjct 242 ACTATCTCTGTGCACAGATTGCTGCATTTGATGGTGCCCAAGTTCTGCTGATTGCTCTTC 183 Query 1628227 AGGTTGACGGCGTCCTTGTGGAGCATGTAGGGCGCGCCGGTCTCGATCTGCGCCGCGACG 1628286 |||| || ||| |||| |||||||||||||| |||||||||| |||| | | ||| | Sbjct 182 CTGTTGCAGGAGTCTTTGTAGAGCATGTAGGGCGTGCCGGTCTCGGTCTGGGACTCGATG 123 Query 1628287 ATGGCCGACCAGATCTGGCGCGCGGGCACGACAGTCCGCGCGCGGCCCT 1628335 ||||| |||||| ||| | || ||| || | ||| ||||||||| Sbjct 122 ATGGCGTACCAGAGCTGCTGGGCCTTCACCACCCTGCGCACGCGGCCCT 74 >seq92776 Length=9696 Score = 98.7 bits (108), Expect = 1e-14 Identities = 90/114 (79%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 869830 CACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGTACATCTCCCATACTTGCTG 869889 ||||||||| || ||||||| || ||||||||||| |||||||||| ||| | | || Sbjct 1515 CACCTCCTCCGCCGTCCAGAAGGAAGCCTCGGCCTTCTTGTACATCTGCCAAATGTCGTG 1456 Query 869890 GTAGCGGATAGGGAAGAGGACAAAGCGGTTGGGGTTGTCGCGCAACAGGGGTTC 869943 ||| |||| ||||||| ||| |||||| |||||||| |||| ||| || || Sbjct 1455 GTACTGGATGGGGAAGATGACGAAGCGGCGCGGGTTGTCCCGCAGCAGCGGCTC 1402 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6044057719471560