Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gallirallus_20okinawae_20[genbank_20GCA_5F002003005.1_202017-02-09] 768,680 sequences; 1,114,530,436 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq272297 205 1e-46 seq317416 167 4e-35 seq184925 165 1e-34 seq92776 96.9 5e-14 >seq272297 Length=239 Score = 205 bits (226), Expect = 1e-46 Identities = 187/236 (79%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 1485478 GTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATGATCAGG 1485537 ||||| |||||||| ||||| ||||| |||||| |||||| |||||| ||| | ||| Sbjct 1 GTGACAGCCTTGGTGCCCTCGGAGACAGCGTGCTTGGCCAACTCGCCGGGCAGCAGCAGC 60 Query 1485538 CGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCGCGCCAGG 1485597 |||||||| ||||||||||| || | | ||| ||| ||||||||| | |||||||| Sbjct 61 CGCACGGCCGTCTGGATCTCCCGCGAGGTGATGGTGGAGCGCTTGTTGTAGTGCGCCAGG 120 Query 1485598 CGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGATCGAC 1485657 || ||||||| | ||||||| |||| ||||||||||| || ||||||||||| | Sbjct 121 CGCGAGGCCTCGCCGGCGATGCGCTCGAAGATGTCGTTGACGAAGGAGTTCATGATGCCC 180 Query 1485658 ATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTAAAC 1485713 || | ||| ||||||||| |||||||||||||||||| ||||||||||| || Sbjct 181 ATGGCCTTGGACGAGATGCCCGTGTCGGGGTGCACCTGCTTCAGCACCTTGTACAC 236 >seq317416 Length=226 Score = 167 bits (184), Expect = 4e-35 Identities = 172/225 (76%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 1485484 GCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACG 1485543 |||||||| ||||| |||||||||||| ||||||| || || | | | || |||||| Sbjct 225 GCCTTGGTGCCCTCCGAGACGGCGTGCTTGGCCAGCTCTCCTGGGAGCAGGAGCCGCACG 166 Query 1485544 GCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCGCGCCAGGCGGCCG 1485603 || ||||||||||| |||| | ||| ||| ||||||||| | | ||||||||| | Sbjct 165 GCTGTCTGGATCTCCCGGGAGGTGATGGTGGAGCGCTTGTTGTAGTGGGCCAGGCGGGAG 106 Query 1485604 GCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGATCGACATCGAT 1485663 || || ||||||| |||| |||||||||||||| ||||||||||| ||| | Sbjct 105 GCTTCTCCAGCGATGCGCTCGAAGATGTCGTTGACAAAGGAGTTCATGATGCCCATGGCC 46 Query 1485664 TTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708 ||| ||||||||| ||||||||| || ||||| ||||| ||| Sbjct 45 TTGGAGGAGATGCCGGTGTCGGGGTGGACTTGCTTCAGCACTTTG 1 >seq184925 Length=1551 Score = 165 bits (182), Expect = 1e-34 Identities = 175/228 (77%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| ||||| || ||||||||| ||||||| || ||| ||| Sbjct 1208 TGTACTTGGTGACGGCCTTGGTGCCCTCGGACACGGCGTGCTTGGCCAGCTCCCCGGGCA 1149 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||| |||||||| ||||| | ||||||| || ||| ||| ||||| | | || | Sbjct 1148 GCAGCAGCCGCACGGCCGTCTGCACCTCGCGGCTGGTGATGGTGCAGCGCTGGGT-GTAC 1090 Query 1485590 -GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTC 1485648 | |||||||| ||||||| | | || |||| || ||||||||| || |||||| Sbjct 1089 TGGGCCAGGCGCGACGCCTCGGCCGCCAGCCGCTCGAACAGGTCGTTGACGAAGGAGTTC 1030 Query 1485649 ATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGC 1485696 ||||| ||| | ||| ||||||||| ||| |||||||||||| Sbjct 1029 ATGATGCTCATGGCCTTGGAGGAGATGCCGGTGTCCGGGTGCACCTGC 982 >seq92776 Length=9696 Score = 96.9 bits (106), Expect = 5e-14 Identities = 89/113 (79%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 796303 ACCTCCTCGGCGGTCCAAAAGGAGGCCTCGGCCTTTTTGTACATCTCCCATATCCGTTGG 796362 |||||||| || ||||| ||||| ||||||||||| |||||||||| ||| || ||| Sbjct 1514 ACCTCCTCCGCCGTCCAGAAGGAAGCCTCGGCCTTCTTGTACATCTGCCAAATGTCGTGG 1455 Query 796363 TAGCGGATGGGGAACAGAACAAAGCGATTGGGGTTCTCGCGTAGCAGCGGCTC 796415 || |||||||||| | || ||||| ||||| || || ||||||||||| Sbjct 1454 TACTGGATGGGGAAGATGACGAAGCGGCGCGGGTTGTCCCGCAGCAGCGGCTC 1402 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7834478402450520