Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gallirallus_20okinawae_20[genbank_20GCA_5F002003005.1_202017-02-09] 768,680 sequences; 1,114,530,436 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq42931 199 5e-46 >seq42931 Length=3913 Score = 199 bits (220), Expect = 5e-46 Identities = 581/885 (66%), Gaps = 25/885 (3%) Strand=Plus/Minus Query 162121 TCGAACTTGTTCGCGAACAGGTGATGCGAGTTCTTCAATATCCAATTAAGATCCCCCGAT 162180 ||||||||||| || || | ||| || ||| | || ||||| || || || || Sbjct 1230 TCGAACTTGTTAGCAAAGAAGTGGTGGT--TTCGT-AACATCCAGTTCAGGTCTCCTACC 1174 Query 162181 CCGAACACGCACACGGACCGCACGTGCACGCCGCTGCACGGCGGATACAGGGCCCCATCG 162240 || || || || || || || | ||| || |||||||| || || || | || || | | Sbjct 1173 CCAAAAACACAGACAGAGCGAATGTGAACTCCGCTGCATGGTGGGTAGGGTGCACCCTTG 1114 Query 162241 TCCACATCCCCCTCGTAGTATTGCCACTTAACGAACCTAGTGATAGCCTGCATGTCGGAG 162300 |||||| || || |||| |||||||| || ||||| | | || | |||||| || Sbjct 1113 GACACATCACCTTCAAAGTACTGCCACTTGACAAACCTGGCCAGTGCATTCATGTCAGAA 1054 Query 162301 GTGTCGTACTTGTACACT-GACGGCACGGCTCCAGGAACACCCGGCAGTCTCTGTAGAGT 162359 ||||||||||| |||| || | || || || || || | || | |||||||| || Sbjct 1053 ACGTCGTACTTGT-CACTAGATGAAACTGCACCTGGGACTTCAGGGATTCTCTGTATTGT 995 Query 162360 AGCCCACAGGTGTTCGTCTGGACTATACGTCTCCTTCGACCACTCCATGAACTCCCTGAC 162419 |||||||||| || ||||| || || || || || | |||||| ||||| | ||| Sbjct 994 TGCCCACAGGTACTCATCTGGGCTGTAAGTGTCTTTTGCCCACTCAATGAAGT---TGAG 938 Query 162420 CGTTTTATCG---TATAGAATGTAAGAGACGTAGGACCTGGTCACAATAAAGTACGCGCT 162476 |||| | | || |||| ||| | ||| | || | ||| || || || Sbjct 937 TATTTTGCTGCTTTCTAATATGTGCTCGACAAATCTTCTGCTAACTACAAAATAGGCACT 878 Query 162477 ACCAGAAAACACGGGTATGCGTATAGGAGGGGGCTCTTTGTCTTGACCCGTGTTGACTAC 162536 ||||||||| | || ||| | ||| || ||| ||||||| ||| ||||| || Sbjct 877 ACCAGAAAAAATTGGAGTGCTGAGAGGCGGTAGCTGTTTGTCTACACCTGTGTTCTTTAT 818 Query 162537 CATTCCCTCTACGACCACGTGTCTCTTCCTCCACCTGGCCATCTTACTGGTAGACGGG-- 162594 | || || | ||| | || || ||||||| | ||| || || || Sbjct 817 TTTACCATCAATAACCTCATGGTGTTTTTTCCACCTTACTTCTTTA----TAAACAGGCA 762 Query 162595 --TGTTCGGTCTCTAGACTGTTACGACCCCCCAAGGCCTTCAGCTGACGCACCATCTCTA 162652 | ||| || || | ||||| ||| | || || | || ||| || || Sbjct 761 TTTTTTCCGTTTCCAAGCTGTTTTCACCTTTAAGAGCTTTTAACTTTTCCACTATTTCCT 702 Query 162653 GATTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAACGC 162712 | |||||||| | |||||||| |||| ||||| ||||| | |||||||| || | Sbjct 701 GGTTGGTCTTTATAGGAAAGTCCATGCCACAGAGGTTAATTAGGTATTTCCAGTTTGAAC 642 Query 162713 TGAGTCCGTACAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGT 162772 | || ||| ||||| | | ||||| | || || || || | ||||| || || | Sbjct 641 TTCTTCTGTAGAGATCTTTCATGCAGTTAATGTCTGCTTGCACCCTGCTCCATGAAGCAT 582 Query 162773 ACACGACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCCCA 162832 | || |||||||| ||| ||| | ||||||||| || ||||| || ||||| ||| Sbjct 581 ATACAACGCTCTCTAACTGGCTGGAAATAAAGACATTATCAAAACATGAGACTATTCCCT 522 Query 162833 TCACGGCCAGTGAGAACA---TCGGGTCCGCTTTCCTATCTACGTGTACGCAGTATAGAT 162889 |||| || || | || | || || ||| | || || || | ||||| | | Sbjct 521 TCACAGC-AGAAAAAAAAGATTCTGGAGACTTTT--TGTCAACATGAATACAGTAGAAGT 465 Query 162890 TCTGAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCA 162949 |||||||||| ||||| | ||||| | ||| || | ||||||||| || || | |||| Sbjct 464 TCTGAGGGGCATAGATTGATCTCAGAAGTCTATCAAGCATCTCTATTTTGTGATAAACCA 405 Query 162950 CGATAGAATACGCTATGGGGAACTCAGCCTCCTCGCGACTGAGAG 162994 | || || || || || || || || || ||||| ||||||| Sbjct 404 CTATTGAGTAAGCAATTGGAAATTCTGCTTCCTCATCGCTGAGAG 360 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 572874136128000