Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gallirallus_20okinawae_20[genbank_20GCA_5F002003005.1_202017-02-09] 768,680 sequences; 1,114,530,436 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq272297 194 2e-43 seq317416 149 9e-30 seq184925 127 3e-23 seq470410 111 2e-18 seq92776 104 3e-16 >seq272297 Length=239 Score = 194 bits (214), Expect = 2e-43 Identities = 181/229 (79%), Gaps = 6/229 (3%) Strand=Plus/Minus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| ||||||||||||||| || || |||| || |||| ||||| Sbjct 233 TACAAGGTGCTGAAGCAGGTGCACCCCGACAC-----GGGCATC-TCGTCCAAGGCCATG 180 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||| || ||||||||||| |||| ||||||| | ||||||| ||| Sbjct 179 GGCATCATGAACTCCTTCGTCAACGACATCTTCGAGCGCATCGCCGGCGAGGCCTCGCGC 120 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| || |||||||||| ||| ||| | |||| ||||||||||| |||||||| Sbjct 119 CTGGCGCACTACAACAAGCGCTCCACCATCACCTCGCGGGAGATCCAGACGGCCGTGCGG 60 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| | ||| |||||| |||||| |||||| |||||||||||||||| Sbjct 59 CTGCTGCTGCCCGGCGAGTTGGCCAAGCACGCTGTCTCCGAGGGCACCA 11 >seq317416 Length=226 Score = 149 bits (164), Expect = 9e-30 Identities = 170/227 (75%), Gaps = 6/227 (3%) Strand=Plus/Plus Query 724916 CAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATGTC 724975 ||| ||||| ||||| || |||||| |||| |||| ||| |||| ||||| Sbjct 1 CAAAGTGCTGAAGCAAGTCCACCCCGACACCGG-----CATC-TCCTCCAAGGCCATGGG 54 Query 724976 GATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGCCT 725035 ||||||||||| |||||||||||||| |||| ||||||| || ||| ||||| Sbjct 55 CATCATGAACTCCTTTGTCAACGACATCTTCGAGCGCATCGCTGGAGAAGCCTCCCGCCT 114 Query 725036 GGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGCCT 725095 ||| | || |||||||||| ||| ||| | | || ||||||||||| |||||||| || Sbjct 115 GGCCCACTACAACAAGCGCTCCACCATCACCTCCCGGGAGATCCAGACAGCCGTGCGGCT 174 Query 725096 GATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 | | | || || ||||||| |||||||||||| |||||||||| Sbjct 175 CCTGCTCCCAGGAGAGCTGGCCAAGCACGCCGTCTCGGAGGGCACCA 221 >seq184925 Length=1551 Score = 127 bits (140), Expect = 3e-23 Identities = 158/215 (73%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 724928 GCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATGTCGATCATGAACTC 724987 |||||||||||| |||| |||| ||| |||| ||||| ||||||||||| Sbjct 982 GCAGGTGCACCCGGACACCGG-----CATC-TCCTCCAAGGCCATGAGCATCATGAACTC 1035 Query 724988 GTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGCCTGGCGCGCTCCAA 725047 || ||||||||| || |||| || | | ||||||| |||||||| | | || Sbjct 1036 CTTCGTCAACGACCTGTTCGAGCGGCTGGCGGCCGAGGCGTCGCGCCTGGCCCAGTACAC 1095 Query 725048 CAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGCCTGATCATGCGCGG 725107 | ||||| ||| ||| || |||||| | ||||| |||||||| ||| | ||| ||| Sbjct 1096 CCAGCGCTGCACCATCACCAGCCGCGAGGTGCAGACGGCCGTGCGGCTGCTGCTGCCCGG 1155 Query 725108 CGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || ||||||| ||||||||| ||||||||||||| Sbjct 1156 GGAGCTGGCCAAGCACGCCGTGTCCGAGGGCACCA 1190 >seq470410 Length=401 Score = 111 bits (122), Expect = 2e-18 Identities = 109/139 (78%), Gaps = 4/139 (3%) Strand=Plus/Plus Query 262091 CAGATCTGGTCGGCCATTGTCGCGGCCCATATCGAGACCGGCACGCCCTACATGGTCTAC 262150 ||| |||||| ||||| ||| | |||| | |||||||||||||||||||||| ||||| Sbjct 106 CAGCTCTGGTACGCCATCATCGAGTCCCAGACCGAGACCGGCACGCCCTACATGCTCTAC 165 Query 262151 AAGGACGCCGTCAACCTGACCAGCAACCAGCAGAACCTGGGCACCACGACAGAGGC--CA 262208 || ||| || |||| || ||||| ||||||||| ||||||||| || | || || Sbjct 166 AAAGACTCCTGCAACAGGAAGAGCAATCAGCAGAACTTGGGCACCA--TCAAATGCAGCA 223 Query 262209 ACCTGTGCACCGAGATCGT 262227 | |||||||| ||||| || Sbjct 224 ATCTGTGCACAGAGATAGT 242 >seq92776 Length=9696 Score = 104 bits (114), Expect = 3e-16 Identities = 92/114 (81%), Gaps = 1/114 (1%) Strand=Plus/Plus Query 1455716 GAGCCGCTGCTGCGCGATAACCCGAACCGCTTTGTCCTGTTCCCCATCCGCTACCAGCGG 1455775 |||||||||||||| || |||||| |||||| ||| | |||||||||| ||||| Sbjct 1402 GAGCCGCTGCTGCGGGACAACCCGCGCCGCTTCGTCATCTTCCCCATCCAGTACCACGAC 1461 Query 1455776 ATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGT 1455829 || ||| | ||||| ||| ||||||||||| ||||| ||||| || |||||||| Sbjct 1462 ATTTGGCAGATGTA-CAAGAAGGCCGAGGCTTCCTTCTGGACGGCGGAGGAGGT 1514 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7103670601166160