Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gallirallus_20okinawae_20[genbank_20GCA_5F002003005.1_202017-02-09] 768,680 sequences; 1,114,530,436 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq51765 113 4e-20 seq92776 100 2e-16 >seq51765 Length=19914 Score = 113 bits (124), Expect = 4e-20 Identities = 119/157 (76%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 41047 TGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGT 41106 ||||||| ||||| || || ||| | || ||||| || ||| ||||| ||||||| Sbjct 11030 TGATGGCTTTGCCTCCGTGCCATGCCCTTTGCCAGTTCTATGTTCTAAATGGCGAACTGT 11089 Query 41107 CATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGA 41166 | || ||| | ||||| |||||||| || ||||||||||| || || || || || || | Sbjct 11090 CTTGCCAACTCTATCAGAGATCAGGAGATATGGGACTAGGAGTGCCTTTCAATATTGCCA 11149 Query 41167 GTTATGCTCTGCTCACGTATATGATTGCACACGTTAC 41203 | || | |||||||| ||||||||||| || || || Sbjct 11150 GCTACTCACTGCTCACATATATGATTGCCCATGTCAC 11186 >seq92776 Length=9696 Score = 100 bits (110), Expect = 2e-16 Identities = 87/108 (81%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 43913 CAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAAT 43972 || ||||| ||| | ||||||| || ||||| ||||| || || |||||||| ||||| Sbjct 2284 CAGGAAGTGCAAGTCACAGAAGCCCGCTGTTTCTATGGCTTCCAGATTGCCATGGAAAAC 2343 Query 43973 ATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020 || ||||| |||||||||||||| || || || || ||||| |||||| Sbjct 2344 ATACATTCAGAAATGTACAGTCTCCTAATTGACACCTACATTAAAGAT 2391 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 393732517923400