Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gallirallus_20okinawae_20[genbank_20GCA_5F002003005.1_202017-02-09] 768,680 sequences; 1,114,530,436 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq4859 237 5e-57 seq254718 105 2e-17 seq146049 104 7e-17 seq396561 98.7 3e-15 seq101884 84.2 7e-11 >seq4859 Length=13494 Score = 237 bits (262), Expect = 5e-57 Identities = 805/1242 (65%), Gaps = 23/1242 (2%) Strand=Plus/Minus Query 349199 GCTATAGGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATCGT 349258 ||||| || ||||| || || || || || || || || | ||| | || ||| Sbjct 6534 GCTATCGGCATCGACTTGGGCACCACATACTCCTGCGTGGGTGTCTTCCAGCATGGCAAA 6475 Query 349259 GTAGAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACC 349318 || || || || || ||||| || || ||| | || ||||| || || || || || Sbjct 6474 GTGGAGATCATCGCCAATGACCAGGGCAACCGCACCACGCCCAGCTATGTGGCCTTCACT 6415 Query 349319 GAAACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAAT 349378 || |||||||| | || || ||| |||| || || || | ||| || || | || Sbjct 6414 GATACTGAGCGCCTCATCGGGGATGCTGCCAAGAACCAGGTGGCTATGAACCCTACCAAC 6355 Query 349379 ACGGTTTTTGATGCTAAGCGACTTATTGGTAGAAGTTTTTCTGACAAATCTACACAATCT 349438 || | |||||||| ||||| || || || | | | | |||| | |||||| Sbjct 6354 ACCATCTTTGATGCCAAGCGTCTCATCGGCCGCAAGTATGATGACCCCACGGTGCAATCT 6295 Query 349439 GATCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTATTGAG 349498 || | || || | || || || || || || ||| || || | | | Sbjct 6294 GACATGAAGCACTGGCCCTTCCGCGTGGTG---AATGAGAGTGGCAAGCCCAAGGTGCAA 6238 Query 349499 GTTGAATATAAAGGTGA-ACAAAAACAATTTTTACCCGAAGAAATTTCATCAATGGTTTT 349557 || || || || ||||| | ||||| || || || || ||||| || ||||| | Sbjct 6237 GTGGAGTACAAGGGTGAGATGAAAACC-TTCTTCCCAGAGGAAATCAGCTCCATGGTCCT 6179 Query 349558 AGTTAAAATGAAGGAAATTGCTGAAGCATAT-TTAGGTGAAACAGTAACTGATGCTGTTA 349616 ||||||||||| |||||||| || ||| || || | || ||| ||||||| | Sbjct 6178 TACCAAAATGAAGGAGATTGCTGAGGCCTATCTTGGGCGCAAG-GTACAGAATGCTGTCA 6120 Query 349617 TTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCA 349676 | ||||| || || || || ||||| | |||||| || || ||||||||||||| || Sbjct 6119 TCACTGTGCCTGCTTACTTCAATGACTCTCAGCGTCAGGCCACCAAAGATGCTGGCACCA 6060 Query 349677 TTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATG 349736 | | || | ||||| | | || || || || ||||| || || || || || |||| Sbjct 6059 TCACTGGCCTTAATGTGATGCGTATTATCAACGAGCCCACAGCAGCTGCTATAGCCTATG 6000 Query 349737 GGCTTGATAAAATGAGTGACCAAG------aaaaaaaTATTCTTATTTTTGATTTAGGTG 349790 | | ||||| | || || || | || ||| | || || ||||| || || | Sbjct 5999 GCTTGGATAAGAAAGGTACCCGAGCTGGTGAGAAGAATGTGCTCATCTTTGACTTGGGAG 5940 Query 349791 GTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAA 349850 | || ||||||||||| || | || || |||| || || || ||||| || || | | Sbjct 5939 GGGGCACTTTTGATGTGTCCATCCTTACCATTGAGGATGGCATCTTTGAGGTGAAGTCCA 5880 Query 349851 CTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTG 349910 | |||||||| || ||||| ||||| || || ||||| || || | || ||||||| Sbjct 5879 CAGCTGGTGACACCCATCTGGGTGGGGAGGACTTTGACAACCGCATGGTGAACCATTTTG 5820 Query 349911 TTAAAGAATTTAAGCGTCAAGC-TAAAATTGATATTGGAGATAATCCTAGAGCAATGCGT 349969 | ||||||| |||||| |||| || |||||||| | || ||||| || | Sbjct 5819 TGGAAGAATTCAAGCGT-AAGCACAAGCGTGATATTGCTGGCAACAAGCGAGCAGTGAGG 5761 Query 349970 CGCCTAAGAACTGCGTGTGAACGTGCTAAGCGTTCCTTATCATCTACTACCCAAACCTCT 350029 || || | || || ||||| | || ||||| || || ||| | || ||| | Sbjct 5760 CGACTGCGTACAGCTTGTGAGAGGGCAAAGCGCACCCTAAGCTCTTCCACACAAGCTAGC 5701 Query 350030 ATTGAAATTGATTCTCTTGCTGATGGCAAAGATTTCTTTTCATCTATTACACGTGCTCGG 350089 ||||| ||||| ||||| || || | || |||| | || ||||| ||||| || Sbjct 5700 ATTGAGATTGACTCTCTCTTCGAGGGTATTGACTTCTACACCTCCATTACTCGTGCCCGC 5641 Query 350090 TTTGAAGAATTATGTATGGATCTTTTTAGAGCAACAATGGATCCTGTGGAAAAAGTATTA 350149 || || || | | |||||||| | | || |||| || ||||| || | || Sbjct 5640 TTCGAGGAGCTCAATGCTGATCTTTTCCGTGGCACCCTGGAGCCAGTGGAGAAGGCCTTG 5581 Query 350150 AAAGATGCAAAAATGTCCAAAAATCAGATTGATGAAGTAGTTTTAGTTGGTGGTTCTACA 350209 ||||| || | ||| || || | || | || | || ||||| ||||| Sbjct 5580 CGTGATGCCAAGCTAGACAAGGGCCAAATCCAGGAGATCGTGCTGGTGGGTGGCTCTACC 5521 Query 350210 CGTATTCCAAAAGTTCAACAGTTACTATCTGAGTTTTTTAATGGCAAAGAAC-CTTCTAG 350268 ||||| || || | ||| || | ||| || || || ||||||||||| | | | || Sbjct 5520 CGTATCCCCAAGATCCAAAAGCTGCTACAGGACTTCTTCAATGGCAAAGAGCTCAACAAG 5461 Query 350269 ATCAATTAATCCAGATGAAGCTGTTGCATATGGTGCTGCTGTTCAGGCATCTATTTTATC 350328 | | || || || ||||| |||||||| || || ||||| || || || |||| | Sbjct 5460 AGC-ATCAACCCTGATGAGGCTGTTGCCTACGGCGCTGCCGTGCAAGCGGCTATCCTCAT 5402 Query 350329 TGGAAATAAGAGTTCTAAAATTG---ATGATCTATTACTACTAGATGTAACTCCACTTTC 350385 ||| | ||| ||| | | || | ||||| | || | ||||| || || || || Sbjct 5401 GGGAGACAAG---TCTGAGAATGTGCAGGATCTGCTGCTGTTGGATGTCACCCCTCTGTC 5345 Query 350386 GCTTGGATTAGAAACTTCTGGTGAAGTAATGACTGTTCTTAT 350427 || || | || || |||||| ||| ||||| | ||| || Sbjct 5344 CCTGGGCATCGAGACAGCTGGTGGAGTGATGACCGCTCTCAT 5303 >seq254718 Length=3011 Score = 105 bits (116), Expect = 2e-17 Identities = 114/151 (75%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 349598 ACAGTAACTGATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCA 349657 || || ||| ||||||| | ||||||||||||||||| || || | ||||| ||| Sbjct 1622 ACTGTTACTAATGCTGTAGTGACTGTACCAGCCTATTTCAACGACTCTCAGCGCCAGGCA 1681 Query 349658 ACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACT 349717 |||||||| ||||| | |||||| ||| | || || || |||| || ||||| || || Sbjct 1682 ACAAAAGACGCTGGAACCATTGCAGGGCTCAACGTGCTGCGAATTATCAATGAGCCAACA 1741 Query 349718 GCTGCAGCAATTGCATATGGGCTTGATAAAA 349748 ||||| || || || ||||| || || |||| Sbjct 1742 GCTGCTGCGATCGCCTATGGTCTGGACAAAA 1772 Score = 89.7 bits (98), Expect = 2e-12 Identities = 116/157 (74%), Gaps = 5/157 (3%) Strand=Plus/Plus Query 349433 CAATCTGATCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATT 349492 || |||||| | || || | ||||| ||||| || || || | || | ||||| Sbjct 1358 CAGTCTGATATGAAGCACTGGCCTTTCACTGTGGTG---AATGATGCTGGCAGACCAAAA 1414 Query 349493 ATTGAGGTTGAATATAAAGGTGAACAAAAACAATTTTTACCC-GAAGAAATTTCATCAAT 349551 | |||| || || ||||| || | ||| | || ||||| |||||||||||||| || Sbjct 1415 GTCCAGGTGGAGTACAAAGGAGAG-ACAAAGAGCTTCTACCCAGAAGAAATTTCATCCAT 1473 Query 349552 GGTTTTAGTTAAAATGAAGGAAATTGCTGAAGCATAT 349588 ||||||| ||||||||||||||||| ||||||||| Sbjct 1474 GGTTTTAACCAAAATGAAGGAAATTGCAGAAGCATAT 1510 >seq146049 Length=5037 Score = 104 bits (114), Expect = 7e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 350177 ATTGATGAAGTAGTTTTAGTTGGTGGTTCTACACGTATTCCAAAAGTTCAACAGTTACTA 350236 |||||||| | ||| | |||||||| ||||| || || || || | || ||| || | Sbjct 3098 ATTGATGAGATTGTTCTCGTTGGTGGCTCTACTCGCATCCCCAAGATACAGCAGCTAGTG 3039 Query 350237 TCTGAGTTTTTTAATGGCAAAGAACCTTCTAGATCAATTAATCCAGATGAAGCTGTTGCA 350296 |||||||| ||||| |||||||||||| | ||||| || ||||| ||||| || Sbjct 3038 AAGGAGTTTTTCAATGGGAAAGAACCTTCTCGTGGTATTAACCCGGATGAGGCTGTAGCC 2979 Query 350297 TATGGTGCTGCTGTTCAGGC 350316 |||||||| ||||||||||| Sbjct 2978 TATGGTGCAGCTGTTCAGGC 2959 Score = 104 bits (114), Expect = 7e-17 Identities = 127/173 (73%), Gaps = 3/173 (2%) Strand=Plus/Minus Query 349715 ACTGCTGCAGCAATTGCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTT 349774 || || || || || |||||||| || || || ||| || ||| || ||||| || Sbjct 3870 ACAGCAGCTGCCATCGCATATGGACTGGACAA---GAGAGAGGGAGAGAAGAATATCCTG 3814 Query 349775 ATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATT 349834 | ||||| || |||||||| || |||||||| || || || ||| |||| | ||| | Sbjct 3813 GTGTTTGACTTGGGTGGTGGAACCTTTGATGTCTCCCTGCTCACAATTGACAATGGAGTG 3754 Query 349835 TTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGA 349887 ||||||||| || ||| |||||| || || || ||||||||||| ||||| Sbjct 3753 TTTGAAGTTGTGGCCACTAATGGTGACACCCACCTGGGTGGAGAAGACTTTGA 3701 Score = 96.9 bits (106), Expect = 1e-14 Identities = 85/106 (80%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 349608 ATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATG 349667 |||||||| ||||||| |||||||| || |||||||| |||||| || || ||||||| Sbjct 4053 ATGCTGTTGTTACTGTGCCAGCCTACTTCAATGATGCGCAGCGTCAGGCTACGAAAGATG 3994 Query 349668 CTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACC 349713 |||| | || || ||||| ||||| | ||||| |||||||| || Sbjct 3993 CTGGTACTATCGCTGGGTTGAATGTGATGAGAATCATTAATGAGCC 3948 Score = 95.1 bits (104), Expect = 4e-14 Identities = 141/198 (71%), Gaps = 4/198 (2%) Strand=Plus/Plus Query 183250 CAGCTTGAACAGCTGCACCATATGCAACAGCTTCATCTGGGTTAATTGAACGAGATAATT 183309 |||| ||||||||||||||||| || ||||| ||||| |||||||| |||||| || Sbjct 2957 CAGCCTGAACAGCTGCACCATAGGCTACAGCCTCATCCGGGTTAATACCACGAGAAGGTT 3016 Query 183310 CTTTGCCATTAAAAAATTCTGAAAGCATTTGTTGAATTTTTGGAATTCTAGTTGAACCAC 183369 |||| ||||| ||||| || | | || || || || || || | ||| || |||| Sbjct 3017 CTTTCCCATTGAAAAACTCCTTCACTAGCTGCTGTATCTTGGGGATGCGAGTAGAGCCAC 3076 Query 183370 CGACTAATACTACTTCATCGATAT--TACTTTTACTAATTTGTGAATCTTTTAAAACTTT 183427 | || | || | ||||| |||| |||||| | | | ||||||| | |||||| Sbjct 3077 CAACGAGAACAATCTCATCAATATCAGACTTTT--TCAGGTCAGAATCTTCCAGAACTTT 3134 Query 183428 TTCAACAGGGTCCATAGT 183445 | |||||| | ||| || Sbjct 3135 CTGAACAGGTTTCATGGT 3152 >seq396561 Length=139 Score = 98.7 bits (108), Expect = 3e-15 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 140553 TGAATATTATAATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGA 140612 || || || || ||||| | || || |||||||| || || || ||||||||||| || Sbjct 1 TGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCCAGCTGCTTCCCAGCAAAGATCAGC 60 Query 140613 CGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATC 140672 | ||||||||||||||||| ||||| || ||||| || || || || ||||| ||||| Sbjct 61 CTCTGCTGATCAGGAGGAATACCTTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATG 120 Query 140673 GAATCAGATGGTTCAAC 140689 | ||| || ||||| Sbjct 121 GTGTCACTGGGCTCAAC 137 >seq101884 Length=11746 Score = 84.2 bits (92), Expect = 7e-11 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 140548 CTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGA 140607 |||||||||| || || ||||| | || || |||||||| || || || |||||||| | Sbjct 4281 CTTTTTGAATGTTGTAGTCAGACAGCGTGCGTCCATCTTCTAGCTGCTTACCAGCAAAAA 4222 Query 140608 TTAGACGTTGCTGATCAGGAGGAATTCCT 140636 | || || ||||||||||||||||| ||| Sbjct 4221 TGAGTCGCTGCTGATCAGGAGGAATGCCT 4193 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1500331095050040