Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gallirallus_20okinawae_20[genbank_20GCA_5F002003005.1_202017-02-09] 768,680 sequences; 1,114,530,436 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq470410 87.8 2e-12 seq30292 82.4 8e-11 >seq470410 Length=401 Score = 87.8 bits (96), Expect = 2e-12 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 79105 ATTTCTGTGCACAAATTAGACGACTTGATGGTGCCGATGTTCTTCTGGTTGCTCTTCTCG 79164 || |||||||||| ||| | ||||||||||| | ||||| ||| ||||||||| | Sbjct 239 ATCTCTGTGCACAGATTGCTGCATTTGATGGTGCCCAAGTTCTGCTGATTGCTCTTCCTG 180 Query 79165 TTACAGGCGTCCTTGTAGCACATGTACGGCGTCCCGGTCTC 79205 || |||| ||| |||||| |||||| ||||| |||||||| Sbjct 179 TTGCAGGAGTCTTTGTAGAGCATGTAGGGCGTGCCGGTCTC 139 >seq30292 Length=3159 Score = 82.4 bits (90), Expect = 8e-11 Identities = 77/98 (79%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 19253 AGCTGTTTCCTAGTGGCTATGAAGGATGACAGCATTGAGGGCATCTACGAGACGCTCAAG 19312 ||||||||||| || ||||||||||||||||| ||||| ||||| || || |||||| Sbjct 2704 AGCTGTTTCCTGCTGTGCATGAAGGATGACAGCATCGAGGGGATCTATGACACCCTCAAG 2645 Query 19313 GAGTGCGCGCACATCTCCAAGTGGTCCGGGGGTATCGG 19350 |||| || | |||||||||| | || || ||||| Sbjct 2644 CAGTGTGCCCTGATCTCCAAGTCTGCTGGTGGGATCGG 2607 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543254299459200