Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gallirallus_20okinawae_20[genbank_20GCA_5F002003005.1_202017-02-09] 768,680 sequences; 1,114,530,436 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq72789 95.1 1e-14 seq102374 89.7 6e-13 seq92776 84.2 2e-11 seq30292 82.4 8e-11 >seq72789 Length=15358 Score = 95.1 bits (104), Expect = 1e-14 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 |||||||| || |||| ||| ||||||||||| |||||| ||| | |||||||| || Sbjct 2324 GTGAAAATATATCGAGGGCTGGCAGCATCCTTTCCACCATGAAGCCTGGTACCGAACTGA 2265 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 ||| | || | || || || | ||||| || |||||||| ||||||||||||||| Sbjct 2264 CCAATAGGTTGCAGCAGATTAACATTGTTACTTCCAACAAAGTTCTGAGCCAAGTTGACA 2205 Query 117425 ATCGT 117429 || || Sbjct 2204 ATAGT 2200 >seq102374 Length=14565 Score = 89.7 bits (98), Expect = 6e-13 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 74772 TCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTC 74831 ||||||||||| || | |||||| || || | || |||||||| || || | ||||||| Sbjct 3396 TCATCTCTGCTAATAAGTTCATTGGAGAAGGTCAGTCCAGGCATCAGGCCTCTCTTCTTC 3455 Query 74832 AACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCG 74891 | |||||| || ||| |||||||| |||||||||||||| || |||||||| Sbjct 3456 AGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAGGCA 3515 Query 74892 AC 74893 || Sbjct 3516 AC 3517 >seq92776 Length=9696 Score = 84.2 bits (92), Expect = 2e-11 Identities = 67/81 (83%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 74462 ATAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCAT 74521 ||| ||||| || ||||| ||||| ||||||||||| ||||||| |||||||| ||||| Sbjct 5750 ATATTCACCTACTCGCTTCTCAAAGAAGTTGGTCTTGCCTTCCAGAGAGATGTTTTCCAT 5691 Query 74522 CCAGTCGAAAGGGTTCTTTGC 74542 |||| ||||| |||| ||| Sbjct 5690 GAAGTCAAAAGGATTCTCTGC 5670 >seq30292 Length=3159 Score = 82.4 bits (90), Expect = 8e-11 Identities = 77/98 (79%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 53330 AGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATCTACGAGACGCTCAAG 53389 ||||| |||||| || |||||||||||| ||||| || ||||| || || |||||| Sbjct 2704 AGCTGTTTCCTGCTGTGCATGAAGGATGACAGCATCGAGGGGATCTATGACACCCTCAAG 2645 Query 53390 GAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGG 53427 ||||||||| |||||||||| | ||||| ||||| Sbjct 2644 CAGTGTGCCCTGATCTCCAAGTCTGCTGGTGGGATCGG 2607 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 541958075064000