Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gallirallus_20okinawae_20[genbank_20GCA_5F002003005.1_202017-02-09] 768,680 sequences; 1,114,530,436 total letters Query= NC_028379.1 Length=205896 Score E Sequences producing significant alignments: (Bits) Value seq14356 194 2e-44 seq171382 120 4e-22 >seq14356 Length=31392 Score = 194 bits (214), Expect = 2e-44 Identities = 612/939 (65%), Gaps = 36/939 (4%) Strand=Plus/Minus Query 13671 CCCCTGAGCCTGGAAGAGGTCGAGTTTCCCATCGCCTACTCGATCGTGATCCACCACAAG 13730 || ||||| | ||| || | ||||| |||||||||||||| || || |||||| |||| Sbjct 31244 CCGCTGAGTCAGGAGGAAGCAGAGTTCCCCATCGCCTACTCCATGGTCATCCACGACAAA 31185 Query 13731 ATCGAGATGTTCGAGCGCCTCCTGAGGGCCATCTACGCCCCGCAGAACCTCTACTGCGTC 13790 || |||||||| ||||| |||||| || | | || |||| |||||| |||||||| || Sbjct 31184 ATTGAGATGTTTGAGCGGCTCCTGCGGTCTCTGTATACCCCCCAGAACGTCTACTGCATC 31125 Query 13791 CACGTGGACTCCAAGTCCGGCGACGAGTTCATCCGGGGCGTCTCGGCCATCGCCAGGTGC 13850 ||| | ||| ||||||| | || ||| || ||| |||||||| ||| Sbjct 31124 CACATCGACAACAAGTCCTCAGCTGACTTCCAGGAGGCCGTGCGGGCCATCGTAGCCTGC 31065 Query 13851 TTCCCTAACGTGGCCCTGGCCCACCGGCTGCACGACGTGGTGTACGGCTCCTGGAGTCGC 13910 ||||| ||||| |||| ||| ||| | | ||||| || | ||||||| || Sbjct 31064 TTCCCCAACGTCTTTGTGGCTAGCCGCCTGGAAAAGGTGGTCTATGCCTCCTGGTCCCGG 31005 Query 13911 GTGCAGGCCGACCTCAGCTGCATGTCGGACCTGGACGCCTCCCCCGTCAAGTGGAGGTAC 13970 ||||||| ||||||| ||||||| ||||||| |||| | ||| | || Sbjct 31004 CTGCAGGCTGACCTCAACTGCATGCAGGACCTGTTGCAGAGCCCCATACCATGGCGCTAT 30945 Query 13971 CTGCTCAACCTGTGCGGGATGGACTTCCCGCTCAAGACCAACCTGGAGATCGTGCGGGCG 14030 | |||||| || || | || ||||| |||||||||| |||||||| || | Sbjct 30944 GTCCTCAACACCTGTGGCACTGATTTCCCCATCAAGACCAATGCTGAGATCGTCCGTGTC 30885 Query 14031 CTGAAGGCCCTG-GGCGGCAAGAACGCCCTGGA--GAGCGAGGGCATGCCCA-ACCACAA 14086 |||||| ||| | ||||| || | |||| || || | | | || || | | Sbjct 30884 TTGAAGGTGCTGCAGGGGCAA-AATAGCATGGAATCAGAGAAGCCCTCAGCATACAAGCA 30826 Query 14087 GCTGCACCG-------CATCAGGAAGAGGCACGTGGTGGCCAGCGGCGGCGTGGTGGTCA 14139 | || | | ||||| |||| | | || | || | | || || Sbjct 30825 GGGGCGCTGGCAATACCATCATGAAGTG----GGGGAGTTCATC-------TTCCGGACA 30777 Query 14140 ACACCGGCAGGAACAAGGCCCCGCCGCCGCTCAGGATCCCCATCTTTGCGGGAAACGCTT 14199 | | |||| |||| || ||||| |||| ||||| || |||| || || | Sbjct 30776 GC-CACGCAGAAACA----GCCTCCGCCTCTCAACTCTCCCATGTTCACGGGCAATGCAT 30722 Query 14200 ACTTTGCGGTCACCCGGGAGTTCGTGGACTTCGTCCTCAAGGACGAGCCGGTGGCCCTGC 14259 || | | |||||| |||| || ||| | | || |||||||| || ||| | || Sbjct 30721 ACATCGTGGTCACACGGGCCTTTGTGCAGCACATCTTCAAGGAC---CCCACGGCACAGC 30665 Query 14260 ---TCATGCACTGGTTCGAGGACACGTACAGCCCCGACGAGCACCTGTGGGCCACCGTGC 14316 || | | ||| | ||||||| |||||||| ||||||||| | ||||||||| | Sbjct 30664 GGTTCCTTGAGTGGGCCAAGGACACCTACAGCCCTGACGAGCACGTATGGGCCACCCTCA 30605 Query 14317 AGAGAATGTACGGGACGCCCGGGGGGATCCCCGTTCACGTCAAGTACGACACCTCGGACA 14376 | | ||| || ||| || | || ||| | | ||||||| | |||||||| Sbjct 30604 ACCGCATGCCTGGCGTGCCGGGTGCCATACCCCAGAATGACAAGTACCAGCTCTCGGACA 30545 Query 14377 TGTGGGCCAAGGTCAGGTTCGTCAAGTGGCACTACTACGAGGGGGATATCAAGAAAGGGG 14436 || ||| | | | ||||||||||| ||| ||||| || | || || || | Sbjct 30544 TGAACGCCCTTCCCCGCATGGTCAAGTGGCAGTACCTGGAGGGCGACACCAGCAAGGGTG 30485 Query 14437 CCCTGTACCCGCCTTGCGACGGCATCCACGTCCACGCCATCTGCATCTTCGGGTCCGGCG 14496 | | |||||||| ||| ||||| ||| | |||| ||||||||| |||| | || | Sbjct 30484 CGCCCTACCCGCCCTGCACCGGCAAGCACCAGCGCGCCGTCTGCATCTACGGGACGGGAG 30425 Query 14497 ACGTGAAGTGGCTG-AAGAGCGTCCCGCACCTGTTCGCCAACAAGTTCGACGACGAGACG 14555 |||| |||||| ||| | | ||||| | ||||||||||||||| | | | Sbjct 30424 ACGTCCCCTGGCTGCTCCAGCAGCAC-CACCTCCTGGCCAACAAGTTCGACCCCTTGGTG 30366 Query 14556 GACGAGTTCGCCGTGCGCTGTCTGGACGAGGACGTGCGC 14594 ||||| |||| | | ||||| || ||| || ||||| Sbjct 30365 GACGATGCCGCCATCCTGTGTCTCGAGGAGCACCTGCGC 30327 >seq171382 Length=3259 Score = 120 bits (132), Expect = 4e-22 Identities = 253/372 (68%), Gaps = 24/372 (6%) Strand=Plus/Minus Query 13695 TTTCCCATCGCCTACTCGATCGTGATCCACCACAAGA---TCGAGATGTTCGAGCGCCTC 13751 || |||||||||||| || ||| || |||||| | |||| |||||||| ||| Sbjct 799 TTCCCCATCGCCTACG---TCATGACCCTGCACAAGGAGTTGGAGACCTTCGAGCGGCTC 743 Query 13752 CTGAGGGCCATCTACGCCCCGCAGAACCTCTACTGCGTCCACGTGGACTCCAAGTC--CG 13809 | ||||| | ||| || || ||| | |||||| ||||||||||| ||||| | || Sbjct 742 TTCAGGGCGGTGTACATGCCCCAAAACATATACTGCATCCACGTGGACGCCAAGGCACCG 683 Query 13810 GCGACGAGTTCATCCGG--GGCGTCTCGGC-CATCGCCAGGTGCTTCCCTAACGTGGCCC 13866 || || ||| | |||| |||| | | | | |||||||| |||| || Sbjct 682 GCCC-----TCTTCCAGCAGGCGGTGCGGCGCCTGGTGGGCTGCTTCCCCAACGCCTTCC 628 Query 13867 TGGCCCACCGGCTGCACGACGTGGTGTACGGCTCCTGGAGTC----GCGTGCAGGCCGAC 13922 | ||| |||| | | ||||| |||||| || ||| || ||| ||| ||| Sbjct 627 TTGCCTCCCGGGCGGAGCGGGTGGTCTACGGC----GGTGTCTCCCGCCTGCGGGCTGAC 572 Query 13923 CTCAGCTGCATGTCGGACCTGGACGCCTCCCCCGTCAAGTGGAGGTACCTGCTCAACCTG 13982 || ||||||| |||||| ||||| |||| ||| | |||||||||||| Sbjct 571 ATCCACTGCATGAGAGACCTGCTGGCCTCGGCCGTGCCCTGGCGCTACCTGCTCAACACC 512 Query 13983 TGCGGGATGGACTTCCCGCTCAAGACCAACCTGGAGATCGTGCGGGCGCTGAAGGCCCTG 14042 |||||| ||||||||| | ||||||||| ||||||||| | | ||||||| || Sbjct 511 TGCGGGCAGGACTTCCCCTTGAAGACCAACAGGGAGATCGTCCAGCTGCTGAAGCAGCTT 452 Query 14043 GGCGGCAAGAAC 14054 || ||||||||| Sbjct 451 GGGGGCAAGAAC 440 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 652409704396800