Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gallirallus_20okinawae_20[genbank_20GCA_5F002003005.1_202017-02-09] 768,680 sequences; 1,114,530,436 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq51765 82.4 7e-11 >seq51765 Length=19914 Score = 82.4 bits (90), Expect = 7e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 34304 AAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGACGCTCACGGGTCTCGAGACTTTCTG 34363 || |||||||| | ||| || ||||| ||||| ||| | || || || || || ||| Sbjct 7685 AAAGAGCTCTCTGCAAAGGGTGTAAAGATTTGGGATGCTAATGGATCACGTGAGTTCCTG 7744 Query 34364 GACAAGCGGGGGTTCCCATCTCGGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCCAG 34423 || || | ||| ||| | | |||||||| || ||||| || || || || |||||| Sbjct 7745 GATAAACAGGGTTTCAGTACCAGAGAGGAGGGTGATTTGGGACCAGTTTATGGTTTCCAG 7804 Query 34424 TGGAGACACTTTGGGGCGGAGTA 34446 ||||| |||||||| || || || Sbjct 7805 TGGAGGCACTTTGGAGCAGAATA 7827 Score = 82.4 bits (90), Expect = 7e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 6899 TACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCC 6958 || || || |||||||| ||||||||||| || || || || ||||| || |||||||| Sbjct 7827 TATTCTGCTCCAAAGTGCCTCCACTGGAAACCATAAACTGGTCCCAAATCACCCTCCTCT 7768 Query 6959 CGAGATGGGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTC 7018 | | ||| ||| | || ||||| || || || || || | ||| ||||| ||||| Sbjct 7767 CTGGTACTGAAACCCTGTTTATCCAGGAACTCACGTGATCCATTAGCATCCCAAATCTTT 7708 Query 7019 ACCCCCCGGGACGAGAGCTCCTT 7041 || ||| | |||||||| || Sbjct 7707 ACACCCTTTGCAGAGAGCTCTTT 7685 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 443955270729600