Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gallirallus_20okinawae_20[genbank_20GCA_5F002003005.1_202017-02-09] 768,680 sequences; 1,114,530,436 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq396561 100 7e-16 seq249769 87.8 4e-12 >seq396561 Length=139 Score = 100 bits (110), Expect = 7e-16 Identities = 97/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 225529 TGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGT 225588 |||| ||||| || | || || | |||||||| |||||||||||||| ||||| || Sbjct 1 TGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCCAGCTGCTTCCCAGCAAAGATCAGC 60 Query 225589 CGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATG 225648 | || || || || ||||||||||||||||| |||||||| ||||||| || ||| Sbjct 61 CTCTGCTGATCAGGAGGAATACCTTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATG 120 Query 225649 GTGTC 225653 ||||| Sbjct 121 GTGTC 125 >seq249769 Length=1561 Score = 87.8 bits (96), Expect = 4e-12 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 4477 TGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACCTGCTTGT 4536 || |||||||| || ||||||||||| || || || |||||||| |||||||| || || Sbjct 156 TGTCCATCAGTGATGGAGATAACATTGGTTGGAATGTAAGCAGACACATCACCGGCCTGA 215 Query 4537 GTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACCAAA 4577 ||||| | ||||| | ||| || || || ||||| ||||| Sbjct 216 GTTTCAATGACAGGCAGGGCGGTCAGAGAGCCACCTCCAAA 256 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1180786303063920