Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gallirallus_20okinawae_20[genbank_20GCA_5F002003005.1_202017-02-09] 768,680 sequences; 1,114,530,436 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq51765 123 2e-23 seq138864 91.5 1e-13 >seq51765 Length=19914 Score = 123 bits (136), Expect = 2e-23 Identities = 127/166 (77%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 29713 TAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGG 29772 |||||| ||||| || || ||||| || ||||| || ||||||||||| || || || || Sbjct 11193 TAGCCCTGTGACATGGGCAATCATATATGTGAGCAGTGAGTAGCTGGCAATATTGAAAGG 11134 Query 29773 CACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCT 29832 ||| || || ||||| || ||||| ||||| ||||| ||||| || || || || | Sbjct 11133 CACTCCTAGTCCCATATCTCCTGATCTCTGATAGAGTTGGCAAGACAGTTCGCCATTTAG 11074 Query 29833 CACGTAAAACTGACACATGGCATGGCACGGAGGAAGGGCCATGAGA 29878 || || ||||| || | ||||||||||||||| | ||||| ||| Sbjct 11073 AACATAGAACTGGCAAAGGGCATGGCACGGAGGCAAAGCCATCAGA 11028 Score = 89.7 bits (98), Expect = 4e-13 Identities = 120/162 (74%), Gaps = 4/162 (2%) Strand=Plus/Minus Query 30017 AAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTG-TGCTCGAA 30075 || |||||||||||||| || || || ||||||| || ||||| || ||| | || ||| Sbjct 7815 AAGTGCCTCCACTGGAAACCATAAACTGGTCCCAAATCACCCTCCTCTCTGGTACT-GAA 7757 Query 30076 GCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTC 30135 ||| || |||| || || | || || || || ||||| |||||||| ||||| | Sbjct 7756 ACCCTGTTTATCCAGGAACTCACGTGATCCATTAGCATCCCAAATCTTTACACCCTTTGC 7697 Query 30136 GGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAG 30177 ||||||||||| | ||||| || || || || || ||||| Sbjct 7696 AGAGAGCTCTTTAGCATTTGTAGAACC-CT-ACAAAACACAG 7657 >seq138864 Length=1742 Score = 91.5 bits (100), Expect = 1e-13 Identities = 85/108 (79%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 114284 TTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 114343 || |||||||||||||| |||| ||| | |||||| | | || | |||||| || || Sbjct 1174 TTGAGCTCCCTGCTGAGCACTATGTTAATTCTGTCTTTTAATGGACGATTCTTCTCAGGA 1115 Query 114344 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTACCT 114391 ||||||||||| || ||| |||||||||||| | ||||| |||||| Sbjct 1114 ATGGAGAACCAGGTTTTTTTACCCATTATCAATGCATTCTGTTTACCT 1067 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 402358146370480