Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gallirallus_20okinawae_20[genbank_20GCA_5F002003005.1_202017-02-09] 768,680 sequences; 1,114,530,436 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq51765 113 3e-20 >seq51765 Length=19914 Score = 113 bits (124), Expect = 3e-20 Identities = 124/165 (75%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 27207 TAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGG 27266 |||||| ||||| || || ||||| || ||||| || ||||||||||| || || || || Sbjct 11193 TAGCCCTGTGACATGGGCAATCATATATGTGAGCAGTGAGTAGCTGGCAATATTGAAAGG 11134 Query 27267 TACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCT 27326 || || || ||||| || || || ||||| ||||| || || || || || |||| Sbjct 11133 CACTCCTAGTCCCATATCTCCTGATCTCTGATAGAGTTGGCAAGACAGTTCGCCATTTAG 11074 Query 27327 TACGTAAAACTGACATATGGCGTGGCACGGAGGAAGAGCCATGAG 27371 || || ||||| || | ||| ||||||||||| | |||||| || Sbjct 11073 AACATAGAACTGGCAAAGGGCATGGCACGGAGGCAAAGCCATCAG 11029 Score = 102 bits (112), Expect = 6e-17 Identities = 136/184 (74%), Gaps = 4/184 (2%) Strand=Plus/Minus Query 27489 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTC 27548 ||| || |||| |||||||| || |||||||| ||||| || || || ||||||| || Sbjct 7837 CATATCTTTGTATTCTGCTCCAAAGTGCCTCCACTGGAAACCATAAACTGGTCCCAAATC 7778 Query 27549 TCCCTCTTCCCTG-TGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGT 27607 ||||| || ||| | || ||| ||| || |||| || || | || || || || | Sbjct 7777 ACCCTCCTCTCTGGTACT-GAAACCCTGTTTATCCAGGAACTCACGTGATCCATTAGCAT 7719 Query 27608 CCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACC 27667 |||| |||||||| ||||| | ||||||||||| | ||||| || || || || || | Sbjct 7718 CCCAAATCTTTACACCCTTTGCAGAGAGCTCTTTAGCATTTGTAGAACC-CT-ACAAAAC 7661 Query 27668 ACAG 27671 |||| Sbjct 7660 ACAG 7657 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 366045550317080