Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gallirallus_20okinawae_20[genbank_20GCA_5F002003005.1_202017-02-09] 768,680 sequences; 1,114,530,436 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq92776 116 5e-21 seq30292 93.3 6e-14 seq102374 89.7 7e-13 seq293044 84.2 3e-11 >seq92776 Length=9696 Score = 116 bits (128), Expect = 5e-21 Identities = 97/119 (82%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 48165 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTG 48224 ||||||||||| || | |||||||||||| ||||| || ||||||| ||| | ||| || Sbjct 4522 TCATCTCTACTGATGAGTTCGTTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCTTC 4463 Query 48225 AGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGC 48283 |||||||| |||| || ||||| ||||||||||| || ||||| || || ||||| || Sbjct 4462 AGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAAAAGC 4404 Score = 86.0 bits (94), Expect = 9e-12 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 47835 GACATAACTCCCATTTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCT 47894 ||||| || ||||| | ||||||||||| || || ||||| || || || || |||||| Sbjct 5770 GACATGACCCCCATCCTCTGATATTCACCTACTCGCTTCTCAAAGAAGTTGGTCTTGCCT 5711 Query 47895 TCCAATGATATATTTTCCATAAAATCAAATGGATTAACTGCATTATAAAT 47944 |||| || || |||||||| || ||||| ||||| |||| || || || Sbjct 5710 TCCAGAGAGATGTTTTCCATGAAGTCAAAAGGATTCTCTGCTTTGTAGAT 5661 >seq30292 Length=3159 Score = 93.3 bits (102), Expect = 6e-14 Identities = 110/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 78002 AACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATG 78061 |||||| ||||| ||||||||||| ||||| || |||| || || |||| || || || Sbjct 1109 AACTCGCTTCATGAAGAGATCAGGAATCCAGAGGGCAAAGAAAAGGTCTCTGGCTCGCTG 1168 Query 78062 TTCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGG 78121 ||||| || || || ||||| || || || |||||||| | || || | ||||| || Sbjct 1169 CTCTTCTTTCCCAGTGTTCTTCTTCAGGTCAAGAAACTCAAAGATGTCCAAGTGCCAGGG 1228 Query 78122 TTCTAGATATATTGCCATAACTCCAGGTC 78150 || || || || || | | | ||||||| Sbjct 1229 CTCCAGGTAGATGGCAAAAGCCCCAGGTC 1257 >seq102374 Length=14565 Score = 89.7 bits (98), Expect = 7e-13 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 48165 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTG 48224 |||||||| ||||| | ||| || || || || || || ||||| || || | || || Sbjct 3396 TCATCTCTGCTAATAAGTTCATTGGAGAAGGTCAGTCCAGGCATCAGGCCTCTCTTCTTC 3455 Query 48225 AGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGC 48283 ||||||||||| || || || || || |||||||| |||||||| || || ||||| || Sbjct 3456 AGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAGGC 3514 >seq293044 Length=654 Score = 84.2 bits (92), Expect = 3e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 77355 GATCCATTATATGTTTCATAAGGTCCTT-CTGTTTCAGCTAGTTCACAACTCGCTTCCAA 77413 || || | ||| |||||||| || |||| || || || |||||||| || |||||||| Sbjct 361 GAACCCTCATAGGTTTCATAGGGCCCTTGCTCCTTG-GCAAGTTCACAGCTGGCTTCCAA 419 Query 77414 TGCTCCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCAATACTATC 77473 || ||||||||||| || || || |||| || || || | || || ||| ||| || Sbjct 420 GGCACCGTAATAAATGGTCTCAAAGATCTGCTGGTTCAGGTGCTGGGCCTCAGGACTCTC 479 Query 77474 AAACGGATAATGTAAAAGAATAAAGGCATCTGCTAATCCCTGAACTCCAATACCAATAGG 77533 ||| || | | ||| || || |||||||| | ||||| || || || || || || Sbjct 480 AAAGGGGAACCTCATAAGGATGAAAGCATCTGCCAGGCCCTGCACGCCGATGCCGATGGG 539 Query 77534 TCTATGTCTCTTATTGGA 77551 | || | | | ||||| Sbjct 540 ACGGTGGCGCCTGTTGGA 557 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 687994074835200