Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gallus_20gallus_20[refseq_20GCF_5F000002315.4_202015-12-16] 23,475 sequences; 1,230,258,557 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq2929 87.8 2e-12 >seq2929 Length=111302122 Score = 87.8 bits (96), Expect = 2e-12 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 17234 ATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGA 17293 || || || || ||||| || ||||||||||| || |||||||| |||||||| ||||| Sbjct 96933151 ATGTATGTGTCAATGAGAAGACTGTACATTTCTGAATGTATGTTTTCCATGGCAATCTGG 96933092 Query 17294 AATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTC 17331 || || || || ||||| ||||||| | ||| ||||| Sbjct 96933091 AAGCCATAGAAACATCGCGCTTCCGTGACTTGCACTTC 96933054 Score = 87.8 bits (96), Expect = 2e-12 Identities = 99/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 16986 CCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCT 17045 |||| ||||||||||| || || |||||||| || | || ||||| |||| ||||| Sbjct 96934804 CCTCATCTCTGCTGATGAGCTCATTAGAAAAAGTGAGTCCAGGCATTAAGCCTCTTTTCT 96934745 Query 17046 TTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACG 17105 | | |||||| || | || || || ||||||||||| || || || || | |||||| | Sbjct 96934744 TCAGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAAATG 96934685 Query 17106 CGATTAATCGTTC 17118 | | || ||||| Sbjct 96934684 CTACTACGCGTTC 96934672 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517393732713000