Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gallus_20gallus_20[refseq_20GCF_5F000002315.4_202015-12-16] 23,475 sequences; 1,230,258,557 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq7516 122 6e-23 seq1781 91.5 1e-13 >seq7516 Length=82310166 Score = 122 bits (134), Expect = 6e-23 Identities = 93/110 (85%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 4290 CTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGG 4349 ||| || ||| ||||||| || | |||||||||| |||||| ||| || ||||||||||| Sbjct 64054996 CTTGAGCTCCCTGCTGAGCACTATATTAATTCTGTCTTTTAGAGGACGATTCTTCTCAGG 64054937 Query 4350 AATTGAGAACCAAGTCTTTTTACCCATAATCACTAAATTCTGTTTATCTG 4399 ||| |||||||| || ||||||||||| |||||| |||||||||| ||| Sbjct 64054936 AATGGAGAACCAGGTTTTTTTACCCATTATCACTGCATTCTGTTTACCTG 64054887 >seq1781 Length=149560735 Score = 91.5 bits (100), Expect = 1e-13 Identities = 121/168 (72%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 101753 GTGACATGAGCAATCATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCCT 101812 ||||| || ||||||||| | || | || |||||||| || ||||| || ||||||||| Sbjct 102230712 GTGACGTGGGCAATCATGTATGTGAGCAGCGAATAGCTGGCGATGTTGAAAGGCACTCCT 102230771 Query 101813 AACCCCATATCAGCTGATCTTTGATACAGTTGACAGGAAAGCTTTCCATCACAGACATAA 101872 | |||||||| | || || ||||||||||| || || || | |||| ||||| Sbjct 102230772 AGTCCCATATCTCCAGACCTCTGATACAGTTGGCAAGACAGTTCACCATTTAGAACATAG 102230831 Query 101873 AATTGACTTAATACATGACAAGGCGGCAACACCATTTTAGGAATGTCT 101920 || || | | |||| ||||| ||||| |||| || ||| ||| Sbjct 102230832 AACTGGCAAAGAGCATGGCAAGGTGGCAAAGCCATCAGAGAAATATCT 102230879 Score = 84.2 bits (92), Expect = 2e-11 Identities = 108/149 (72%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 102033 CTTTATATTCTGCTCCGAAATGCCTCCACTGAAATCCATACACAGGTCCAAGATCTCCTT 102092 |||| || |||||||| ||||||||||| || || ||||| || ||||| | || || | Sbjct 102234829 CTTTGTAATCTGCTCCAAAATGCCTCCATTGGAAACCATAAACTGGTCCCAAGTCCCCCT 102234888 Query 102093 CATCTCTGTCATAAAAACCAAGTTTATCTAAAAATGATCTAGATCCATTCGCATCCCAAA 102152 | |||||| |||| || | ||||| | || | || ||||| |||||||||| Sbjct 102234889 CTTCTCTGGTGCAAAACCCCTGCTTATCCAGGAACTCACGTGACCCATTGGCATCCCAAA 102234948 Query 102153 TGTGCACGCCAGCTGCTGATAGCTCTTTG 102181 | | ||| || ||| || ||||||||| Sbjct 102234949 TCTTCACACCCTTTGCAGAGAGCTCTTTG 102234977 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361147845467225