Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gallus_20gallus_20[refseq_20GCF_5F000002315.4_202015-12-16]
23,475 sequences; 1,230,258,557 total letters
Query= NC_001350.1
Length=112930
Score E
Sequences producing significant alignments: (Bits) Value
seq7516 122 6e-23
seq1781 91.5 1e-13
>seq7516
Length=82310166
Score = 122 bits (134), Expect = 6e-23
Identities = 93/110 (85%), Gaps = 0/110 (0%)
Strand=Plus/Minus
Query 4290 CTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGG 4349
||| || ||| ||||||| || | |||||||||| |||||| ||| || |||||||||||
Sbjct 64054996 CTTGAGCTCCCTGCTGAGCACTATATTAATTCTGTCTTTTAGAGGACGATTCTTCTCAGG 64054937
Query 4350 AATTGAGAACCAAGTCTTTTTACCCATAATCACTAAATTCTGTTTATCTG 4399
||| |||||||| || ||||||||||| |||||| |||||||||| |||
Sbjct 64054936 AATGGAGAACCAGGTTTTTTTACCCATTATCACTGCATTCTGTTTACCTG 64054887
>seq1781
Length=149560735
Score = 91.5 bits (100), Expect = 1e-13
Identities = 121/168 (72%), Gaps = 0/168 (0%)
Strand=Plus/Plus
Query 101753 GTGACATGAGCAATCATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCCT 101812
||||| || ||||||||| | || | || |||||||| || ||||| || |||||||||
Sbjct 102230712 GTGACGTGGGCAATCATGTATGTGAGCAGCGAATAGCTGGCGATGTTGAAAGGCACTCCT 102230771
Query 101813 AACCCCATATCAGCTGATCTTTGATACAGTTGACAGGAAAGCTTTCCATCACAGACATAA 101872
| |||||||| | || || ||||||||||| || || || | |||| |||||
Sbjct 102230772 AGTCCCATATCTCCAGACCTCTGATACAGTTGGCAAGACAGTTCACCATTTAGAACATAG 102230831
Query 101873 AATTGACTTAATACATGACAAGGCGGCAACACCATTTTAGGAATGTCT 101920
|| || | | |||| ||||| ||||| |||| || ||| |||
Sbjct 102230832 AACTGGCAAAGAGCATGGCAAGGTGGCAAAGCCATCAGAGAAATATCT 102230879
Score = 84.2 bits (92), Expect = 2e-11
Identities = 108/149 (72%), Gaps = 0/149 (0%)
Strand=Plus/Plus
Query 102033 CTTTATATTCTGCTCCGAAATGCCTCCACTGAAATCCATACACAGGTCCAAGATCTCCTT 102092
|||| || |||||||| ||||||||||| || || ||||| || ||||| | || || |
Sbjct 102234829 CTTTGTAATCTGCTCCAAAATGCCTCCATTGGAAACCATAAACTGGTCCCAAGTCCCCCT 102234888
Query 102093 CATCTCTGTCATAAAAACCAAGTTTATCTAAAAATGATCTAGATCCATTCGCATCCCAAA 102152
| |||||| |||| || | ||||| | || | || ||||| ||||||||||
Sbjct 102234889 CTTCTCTGGTGCAAAACCCCTGCTTATCCAGGAACTCACGTGACCCATTGGCATCCCAAA 102234948
Query 102153 TGTGCACGCCAGCTGCTGATAGCTCTTTG 102181
| | ||| || ||| || |||||||||
Sbjct 102234949 TCTTCACACCCTTTGCAGAGAGCTCTTTG 102234977
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 361147845467225
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |